Hb_001662_030

Information

Type -
Description -
Location Contig1662: 63704-64942
Sequence    

Annotation

kegg
ID pop:POPTR_0001s28400g
description POPTRDRAFT_549413; hypothetical protein
nr
ID XP_011024950.1
description PREDICTED: F-box protein SKIP23-like [Populus euphratica]
swissprot
ID Q3EBZ2
description F-box protein SKIP23 OS=Arabidopsis thaliana GN=SKIP23 PE=1 SV=1
trembl
ID B9GG99
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s28400g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001662_030 0.0 - - PREDICTED: F-box protein SKIP23-like [Populus euphratica]
2 Hb_000034_160 0.0983653044 - - hypothetical protein EUGRSUZ_F02151 [Eucalyptus grandis]
3 Hb_000258_120 0.1008066969 - - PREDICTED: uncharacterized protein LOC105630440 [Jatropha curcas]
4 Hb_001189_130 0.1016835482 transcription factor TF Family: NAC PREDICTED: protein ATAF2-like [Jatropha curcas]
5 Hb_075449_020 0.1038250094 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
6 Hb_000390_220 0.1039111067 - - PREDICTED: uncharacterized protein LOC100244219 [Vitis vinifera]
7 Hb_000283_130 0.1050928545 - - PREDICTED: PRA1 family protein E-like [Populus euphratica]
8 Hb_000336_110 0.11130721 - - Uracil phosphoribosyltransferase, putative [Ricinus communis]
9 Hb_004017_040 0.1132587788 - - kinetochore protein nuf2, putative [Ricinus communis]
10 Hb_000457_050 0.1197723154 - - PREDICTED: tether containing UBX domain for GLUT4 [Jatropha curcas]
11 Hb_002326_020 0.1199208934 - - hypothetical protein POPTR_0002s13160g [Populus trichocarpa]
12 Hb_007403_050 0.1212174232 - - PREDICTED: protein YIPF5 homolog [Jatropha curcas]
13 Hb_005333_030 0.1223539395 - - hypothetical protein JCGZ_15866 [Jatropha curcas]
14 Hb_009771_100 0.1227677766 - - PREDICTED: uncharacterized protein LOC105141784 [Populus euphratica]
15 Hb_011909_060 0.1238971974 - - PREDICTED: zinc finger protein CONSTANS-LIKE 1 [Jatropha curcas]
16 Hb_000540_120 0.1239927489 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
17 Hb_000953_030 0.1269776224 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]
18 Hb_000120_420 0.1284486113 - - PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
19 Hb_011465_030 0.1295086147 - - PREDICTED: B2 protein [Jatropha curcas]
20 Hb_001301_320 0.1303180282 - - PREDICTED: uncharacterized protein LOC105632955 [Jatropha curcas]

Gene co-expression network

sample Hb_001662_030 Hb_001662_030 Hb_000034_160 Hb_000034_160 Hb_001662_030--Hb_000034_160 Hb_000258_120 Hb_000258_120 Hb_001662_030--Hb_000258_120 Hb_001189_130 Hb_001189_130 Hb_001662_030--Hb_001189_130 Hb_075449_020 Hb_075449_020 Hb_001662_030--Hb_075449_020 Hb_000390_220 Hb_000390_220 Hb_001662_030--Hb_000390_220 Hb_000283_130 Hb_000283_130 Hb_001662_030--Hb_000283_130 Hb_007403_050 Hb_007403_050 Hb_000034_160--Hb_007403_050 Hb_004032_180 Hb_004032_180 Hb_000034_160--Hb_004032_180 Hb_000034_160--Hb_000283_130 Hb_003373_040 Hb_003373_040 Hb_000034_160--Hb_003373_040 Hb_000457_050 Hb_000457_050 Hb_000034_160--Hb_000457_050 Hb_010738_010 Hb_010738_010 Hb_000034_160--Hb_010738_010 Hb_002326_020 Hb_002326_020 Hb_000258_120--Hb_002326_020 Hb_000258_120--Hb_000034_160 Hb_031527_090 Hb_031527_090 Hb_000258_120--Hb_031527_090 Hb_000258_120--Hb_000283_130 Hb_000258_120--Hb_000457_050 Hb_000449_050 Hb_000449_050 Hb_001189_130--Hb_000449_050 Hb_001141_370 Hb_001141_370 Hb_001189_130--Hb_001141_370 Hb_000340_110 Hb_000340_110 Hb_001189_130--Hb_000340_110 Hb_000152_340 Hb_000152_340 Hb_001189_130--Hb_000152_340 Hb_000540_120 Hb_000540_120 Hb_001189_130--Hb_000540_120 Hb_075449_020--Hb_000390_220 Hb_025306_010 Hb_025306_010 Hb_075449_020--Hb_025306_010 Hb_075449_020--Hb_000540_120 Hb_011465_030 Hb_011465_030 Hb_075449_020--Hb_011465_030 Hb_001999_250 Hb_001999_250 Hb_075449_020--Hb_001999_250 Hb_000390_220--Hb_001189_130 Hb_000390_220--Hb_025306_010 Hb_001307_010 Hb_001307_010 Hb_000390_220--Hb_001307_010 Hb_000953_030 Hb_000953_030 Hb_000390_220--Hb_000953_030 Hb_005883_010 Hb_005883_010 Hb_000283_130--Hb_005883_010 Hb_000283_130--Hb_010738_010 Hb_000406_240 Hb_000406_240 Hb_000283_130--Hb_000406_240 Hb_017075_030 Hb_017075_030 Hb_000283_130--Hb_017075_030 Hb_000283_130--Hb_000457_050 Hb_004635_050 Hb_004635_050 Hb_000283_130--Hb_004635_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.70735 2.27163 0.817579 0.69563 1.40028 0.876538
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.702933 0.337915 0.34343 0.49195 0.127374

CAGE analysis