Hb_031527_090

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig31527: 63155-66779
Sequence    

Annotation

kegg
ID rcu:RCOM_1604380
description DNA binding protein, putative
nr
ID XP_012074729.1
description PREDICTED: protein REVEILLE 1 isoform X2 [Jatropha curcas]
swissprot
ID F4KGY6
description Protein REVEILLE 1 OS=Arabidopsis thaliana GN=RVE1 PE=2 SV=1
trembl
ID A0A067KI22
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10504 PE=4 SV=1
Gene Ontology
ID GO:0005488
description rve1-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33265: 63252-66742 , PASA_asmbl_33266: 64694-65188
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031527_090 0.0 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 1 isoform X2 [Jatropha curcas]
2 Hb_000336_110 0.1001476488 - - Uracil phosphoribosyltransferase, putative [Ricinus communis]
3 Hb_000258_120 0.1018091396 - - PREDICTED: uncharacterized protein LOC105630440 [Jatropha curcas]
4 Hb_011909_060 0.1120401907 - - PREDICTED: zinc finger protein CONSTANS-LIKE 1 [Jatropha curcas]
5 Hb_031711_010 0.1145868715 - - PREDICTED: CDPK-related kinase 4-like isoform X1 [Jatropha curcas]
6 Hb_000264_080 0.1172253449 - - hypothetical protein JCGZ_21412 [Jatropha curcas]
7 Hb_000034_160 0.1175354901 - - hypothetical protein EUGRSUZ_F02151 [Eucalyptus grandis]
8 Hb_000120_420 0.1209337955 - - PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
9 Hb_000625_120 0.1221752101 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]
10 Hb_002326_020 0.1222027943 - - hypothetical protein POPTR_0002s13160g [Populus trichocarpa]
11 Hb_005565_050 0.1244760765 - - hypothetical protein CICLE_v10010292mg [Citrus clementina]
12 Hb_005355_030 0.1248180419 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
13 Hb_003299_030 0.1251540047 - - PREDICTED: uncharacterized protein At1g27050 isoform X1 [Jatropha curcas]
14 Hb_000069_590 0.1256903805 - - auxin-responsive GH3 family protein [Hevea brasiliensis]
15 Hb_009771_100 0.1262449735 - - PREDICTED: uncharacterized protein LOC105141784 [Populus euphratica]
16 Hb_007894_130 0.1276413329 - - hypothetical protein RCOM_0584960 [Ricinus communis]
17 Hb_002043_090 0.1276699946 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
18 Hb_000363_280 0.1280076347 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: angiomotin [Cucumis sativus]
19 Hb_167381_020 0.1283296001 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
20 Hb_012114_050 0.1293539471 - - PREDICTED: uncharacterized protein LOC105645815 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_031527_090 Hb_031527_090 Hb_000336_110 Hb_000336_110 Hb_031527_090--Hb_000336_110 Hb_000258_120 Hb_000258_120 Hb_031527_090--Hb_000258_120 Hb_011909_060 Hb_011909_060 Hb_031527_090--Hb_011909_060 Hb_031711_010 Hb_031711_010 Hb_031527_090--Hb_031711_010 Hb_000264_080 Hb_000264_080 Hb_031527_090--Hb_000264_080 Hb_000034_160 Hb_000034_160 Hb_031527_090--Hb_000034_160 Hb_000336_110--Hb_000264_080 Hb_000363_280 Hb_000363_280 Hb_000336_110--Hb_000363_280 Hb_000120_420 Hb_000120_420 Hb_000336_110--Hb_000120_420 Hb_009771_100 Hb_009771_100 Hb_000336_110--Hb_009771_100 Hb_167381_020 Hb_167381_020 Hb_000336_110--Hb_167381_020 Hb_000069_590 Hb_000069_590 Hb_000336_110--Hb_000069_590 Hb_002326_020 Hb_002326_020 Hb_000258_120--Hb_002326_020 Hb_000258_120--Hb_000034_160 Hb_001662_030 Hb_001662_030 Hb_000258_120--Hb_001662_030 Hb_000283_130 Hb_000283_130 Hb_000258_120--Hb_000283_130 Hb_000457_050 Hb_000457_050 Hb_000258_120--Hb_000457_050 Hb_011909_060--Hb_000363_280 Hb_011909_060--Hb_000120_420 Hb_011909_060--Hb_009771_100 Hb_011909_060--Hb_031711_010 Hb_001141_370 Hb_001141_370 Hb_011909_060--Hb_001141_370 Hb_002997_160 Hb_002997_160 Hb_011909_060--Hb_002997_160 Hb_031711_010--Hb_009771_100 Hb_000230_430 Hb_000230_430 Hb_031711_010--Hb_000230_430 Hb_031711_010--Hb_000457_050 Hb_001243_060 Hb_001243_060 Hb_031711_010--Hb_001243_060 Hb_007193_110 Hb_007193_110 Hb_031711_010--Hb_007193_110 Hb_000926_010 Hb_000926_010 Hb_000264_080--Hb_000926_010 Hb_000061_490 Hb_000061_490 Hb_000264_080--Hb_000061_490 Hb_000227_310 Hb_000227_310 Hb_000264_080--Hb_000227_310 Hb_004410_070 Hb_004410_070 Hb_000264_080--Hb_004410_070 Hb_007017_070 Hb_007017_070 Hb_000264_080--Hb_007017_070 Hb_007403_050 Hb_007403_050 Hb_000034_160--Hb_007403_050 Hb_004032_180 Hb_004032_180 Hb_000034_160--Hb_004032_180 Hb_000034_160--Hb_000283_130 Hb_003373_040 Hb_003373_040 Hb_000034_160--Hb_003373_040 Hb_000034_160--Hb_000457_050 Hb_010738_010 Hb_010738_010 Hb_000034_160--Hb_010738_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.723 74.1001 49.3982 19.466 40.0436 44.2966
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.9506 15.3539 12.1753 24.854 5.57246

CAGE analysis