Hb_031711_010

Information

Type -
Description -
Location Contig31711: 367-24779
Sequence    

Annotation

kegg
ID rcu:RCOM_1370990
description calcium-dependent protein kinase, putative (EC:2.7.11.17)
nr
ID XP_012090819.1
description PREDICTED: CDPK-related kinase 4-like isoform X1 [Jatropha curcas]
swissprot
ID Q9FIM9
description CDPK-related kinase 4 OS=Arabidopsis thaliana GN=CRK4 PE=2 SV=1
trembl
ID A0A067JDN7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03151 PE=4 SV=1
Gene Ontology
ID GO:0004683
description cdpk-related kinase 4-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33431: 6136-7469 , PASA_asmbl_33432: 4553-22086
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031711_010 0.0 - - PREDICTED: CDPK-related kinase 4-like isoform X1 [Jatropha curcas]
2 Hb_009771_100 0.065114114 - - PREDICTED: uncharacterized protein LOC105141784 [Populus euphratica]
3 Hb_011909_060 0.0870026025 - - PREDICTED: zinc finger protein CONSTANS-LIKE 1 [Jatropha curcas]
4 Hb_000230_430 0.0876429259 - - catalytic, putative [Ricinus communis]
5 Hb_000457_050 0.0882882612 - - PREDICTED: tether containing UBX domain for GLUT4 [Jatropha curcas]
6 Hb_001243_060 0.0934051471 - - PREDICTED: probable magnesium transporter NIPA6 [Jatropha curcas]
7 Hb_007193_110 0.0954887641 - - PREDICTED: E3 ubiquitin-protein ligase RNF14 [Jatropha curcas]
8 Hb_000625_120 0.0960535281 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]
9 Hb_000283_130 0.0970312095 - - PREDICTED: PRA1 family protein E-like [Populus euphratica]
10 Hb_005188_060 0.0997430208 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
11 Hb_000336_110 0.0997548231 - - Uracil phosphoribosyltransferase, putative [Ricinus communis]
12 Hb_001141_370 0.1008134187 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
13 Hb_012114_050 0.1017222422 - - PREDICTED: uncharacterized protein LOC105645815 isoform X1 [Jatropha curcas]
14 Hb_000069_590 0.1028758816 - - auxin-responsive GH3 family protein [Hevea brasiliensis]
15 Hb_001307_010 0.1030820241 - - PREDICTED: uncharacterized protein LOC103939917 [Pyrus x bretschneideri]
16 Hb_000261_220 0.1045228371 - - PREDICTED: TBC1 domain family member 13 [Jatropha curcas]
17 Hb_003086_190 0.1049725709 - - PREDICTED: uncharacterized protein LOC105635794 [Jatropha curcas]
18 Hb_002379_050 0.1058250705 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
19 Hb_000116_060 0.1060155438 - - plant ubiquilin, putative [Ricinus communis]
20 Hb_002025_110 0.1061399631 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: SWI/SNF complex component SNF12 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_031711_010 Hb_031711_010 Hb_009771_100 Hb_009771_100 Hb_031711_010--Hb_009771_100 Hb_011909_060 Hb_011909_060 Hb_031711_010--Hb_011909_060 Hb_000230_430 Hb_000230_430 Hb_031711_010--Hb_000230_430 Hb_000457_050 Hb_000457_050 Hb_031711_010--Hb_000457_050 Hb_001243_060 Hb_001243_060 Hb_031711_010--Hb_001243_060 Hb_007193_110 Hb_007193_110 Hb_031711_010--Hb_007193_110 Hb_009780_100 Hb_009780_100 Hb_009771_100--Hb_009780_100 Hb_009771_100--Hb_011909_060 Hb_001141_370 Hb_001141_370 Hb_009771_100--Hb_001141_370 Hb_009771_100--Hb_000457_050 Hb_000061_490 Hb_000061_490 Hb_009771_100--Hb_000061_490 Hb_000363_280 Hb_000363_280 Hb_011909_060--Hb_000363_280 Hb_000120_420 Hb_000120_420 Hb_011909_060--Hb_000120_420 Hb_011909_060--Hb_001141_370 Hb_002997_160 Hb_002997_160 Hb_011909_060--Hb_002997_160 Hb_000230_430--Hb_001243_060 Hb_002902_020 Hb_002902_020 Hb_000230_430--Hb_002902_020 Hb_004631_190 Hb_004631_190 Hb_000230_430--Hb_004631_190 Hb_000264_070 Hb_000264_070 Hb_000230_430--Hb_000264_070 Hb_000230_430--Hb_009780_100 Hb_118840_050 Hb_118840_050 Hb_000230_430--Hb_118840_050 Hb_000261_220 Hb_000261_220 Hb_000457_050--Hb_000261_220 Hb_008511_030 Hb_008511_030 Hb_000457_050--Hb_008511_030 Hb_003299_030 Hb_003299_030 Hb_000457_050--Hb_003299_030 Hb_000283_130 Hb_000283_130 Hb_000457_050--Hb_000283_130 Hb_000152_340 Hb_000152_340 Hb_000457_050--Hb_000152_340 Hb_000116_060 Hb_000116_060 Hb_001243_060--Hb_000116_060 Hb_001243_060--Hb_009780_100 Hb_000331_330 Hb_000331_330 Hb_001243_060--Hb_000331_330 Hb_003858_090 Hb_003858_090 Hb_001243_060--Hb_003858_090 Hb_001243_060--Hb_001141_370 Hb_012114_050 Hb_012114_050 Hb_007193_110--Hb_012114_050 Hb_004410_070 Hb_004410_070 Hb_007193_110--Hb_004410_070 Hb_007576_220 Hb_007576_220 Hb_007193_110--Hb_007576_220 Hb_000094_320 Hb_000094_320 Hb_007193_110--Hb_000094_320 Hb_000556_170 Hb_000556_170 Hb_007193_110--Hb_000556_170 Hb_001021_200 Hb_001021_200 Hb_007193_110--Hb_001021_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.95562 18.5376 11.56 5.14937 13.4449 9.0989
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.58057 4.92427 4.82056 3.52923 3.49387

CAGE analysis