Hb_001171_070

Information

Type -
Description -
Location Contig1171: 141341-145768
Sequence    

Annotation

kegg
ID rcu:RCOM_0559760
description 2-oxoisovalerate dehydrogenase, putative (EC:1.2.4.4)
nr
ID XP_012066121.1
description PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha 1, mitochondrial-like isoform X1 [Jatropha curcas]
swissprot
ID Q9LPL5
description 2-oxoisovalerate dehydrogenase subunit alpha 1, mitochondrial OS=Arabidopsis thaliana GN=At1g21400 PE=2 SV=1
trembl
ID A0A067L764
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25274 PE=4 SV=1
Gene Ontology
ID GO:0016624
description thiamin diphosphate-binding fold (thdp-binding) superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05297: 141503-143752 , PASA_asmbl_05298: 143843-145759
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001171_070 0.0 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha 1, mitochondrial-like isoform X1 [Jatropha curcas]
2 Hb_000261_220 0.0787421999 - - PREDICTED: TBC1 domain family member 13 [Jatropha curcas]
3 Hb_002025_110 0.0821833214 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: SWI/SNF complex component SNF12 homolog isoform X1 [Jatropha curcas]
4 Hb_001083_050 0.0891880119 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
5 Hb_006346_040 0.0940073847 - - hypothetical protein JCGZ_20335 [Jatropha curcas]
6 Hb_000457_050 0.0960804031 - - PREDICTED: tether containing UBX domain for GLUT4 [Jatropha curcas]
7 Hb_005489_080 0.0985119446 - - conserved hypothetical protein [Ricinus communis]
8 Hb_031527_020 0.1064747996 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]
9 Hb_000140_330 0.1132733147 - - PREDICTED: uncharacterized protein LOC105642909 [Jatropha curcas]
10 Hb_002351_020 0.1151272948 - - PREDICTED: rRNA methyltransferase 3B, mitochondrial [Jatropha curcas]
11 Hb_031711_010 0.1159791802 - - PREDICTED: CDPK-related kinase 4-like isoform X1 [Jatropha curcas]
12 Hb_000032_490 0.1161446237 - - PREDICTED: uncharacterized protein At4g10930-like [Jatropha curcas]
13 Hb_000140_080 0.1170017269 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
14 Hb_008511_030 0.1181520023 - - guanine nucleotide-binding protein beta, putative [Ricinus communis]
15 Hb_000181_120 0.1187140499 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
16 Hb_000656_250 0.1197415329 - - hypothetical protein JCGZ_24680 [Jatropha curcas]
17 Hb_111198_010 0.1208899506 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
18 Hb_005188_060 0.1209234547 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
19 Hb_005541_010 0.1211708747 - - PREDICTED: uncharacterized protein LOC105629250 [Jatropha curcas]
20 Hb_000283_130 0.1214727842 - - PREDICTED: PRA1 family protein E-like [Populus euphratica]

Gene co-expression network

sample Hb_001171_070 Hb_001171_070 Hb_000261_220 Hb_000261_220 Hb_001171_070--Hb_000261_220 Hb_002025_110 Hb_002025_110 Hb_001171_070--Hb_002025_110 Hb_001083_050 Hb_001083_050 Hb_001171_070--Hb_001083_050 Hb_006346_040 Hb_006346_040 Hb_001171_070--Hb_006346_040 Hb_000457_050 Hb_000457_050 Hb_001171_070--Hb_000457_050 Hb_005489_080 Hb_005489_080 Hb_001171_070--Hb_005489_080 Hb_000261_220--Hb_001083_050 Hb_000261_220--Hb_002025_110 Hb_000261_220--Hb_000457_050 Hb_000261_220--Hb_005489_080 Hb_031527_020 Hb_031527_020 Hb_000261_220--Hb_031527_020 Hb_000140_080 Hb_000140_080 Hb_000261_220--Hb_000140_080 Hb_002025_110--Hb_005489_080 Hb_111198_010 Hb_111198_010 Hb_002025_110--Hb_111198_010 Hb_033095_020 Hb_033095_020 Hb_002025_110--Hb_033095_020 Hb_002025_110--Hb_000140_080 Hb_002025_110--Hb_031527_020 Hb_000477_030 Hb_000477_030 Hb_001083_050--Hb_000477_030 Hb_009252_100 Hb_009252_100 Hb_001083_050--Hb_009252_100 Hb_057878_010 Hb_057878_010 Hb_001083_050--Hb_057878_010 Hb_005883_010 Hb_005883_010 Hb_001083_050--Hb_005883_010 Hb_000283_130 Hb_000283_130 Hb_006346_040--Hb_000283_130 Hb_006346_040--Hb_005883_010 Hb_007403_050 Hb_007403_050 Hb_006346_040--Hb_007403_050 Hb_000084_030 Hb_000084_030 Hb_006346_040--Hb_000084_030 Hb_006346_040--Hb_000457_050 Hb_008511_030 Hb_008511_030 Hb_000457_050--Hb_008511_030 Hb_003299_030 Hb_003299_030 Hb_000457_050--Hb_003299_030 Hb_000457_050--Hb_000283_130 Hb_009771_100 Hb_009771_100 Hb_000457_050--Hb_009771_100 Hb_000152_340 Hb_000152_340 Hb_000457_050--Hb_000152_340 Hb_005489_080--Hb_031527_020 Hb_000732_120 Hb_000732_120 Hb_005489_080--Hb_000732_120 Hb_004128_050 Hb_004128_050 Hb_005489_080--Hb_004128_050 Hb_003785_040 Hb_003785_040 Hb_005489_080--Hb_003785_040 Hb_005489_080--Hb_111198_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.4857 13.5387 6.88145 4.93302 12.8306 8.93739
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.96837 6.53239 6.97534 1.43029 3.59997

CAGE analysis