Hb_002626_040

Information

Type -
Description -
Location Contig2626: 23675-39735
Sequence    

Annotation

kegg
ID rcu:RCOM_0711290
description inter-alpha-trypsin inhibitor heavy chain, putative
nr
ID XP_012077071.1
description PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
swissprot
ID F4K5L5
description Protein trichome birefringence-like 16 OS=Arabidopsis thaliana GN=TBL16 PE=2 SV=1
trembl
ID A0A067KG00
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07504 PE=4 SV=1
Gene Ontology
ID GO:0005886
description inter-alpha-trypsin inhibitor heavy chain h3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27418: 23689-25683 , PASA_asmbl_27420: 33533-39670 , PASA_asmbl_27421: 35206-39524 , PASA_asmbl_27422: 35206-38645
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002626_040 0.0 - - PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
2 Hb_003906_190 0.1035468955 - - hypothetical protein EUGRSUZ_K00213 [Eucalyptus grandis]
3 Hb_032202_240 0.1233506183 - - PREDICTED: F-box protein At4g00755 [Jatropha curcas]
4 Hb_002477_150 0.1277278196 transcription factor TF Family: Alfin-like DNA binding protein, putative [Ricinus communis]
5 Hb_006316_070 0.1318081745 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
6 Hb_011465_030 0.1346547269 - - PREDICTED: B2 protein [Jatropha curcas]
7 Hb_002977_010 0.1370372367 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
8 Hb_156144_010 0.1388225338 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9 [Jatropha curcas]
9 Hb_002374_350 0.1450058096 - - PREDICTED: delta-aminolevulinic acid dehydratase, chloroplastic [Populus euphratica]
10 Hb_148209_020 0.147101262 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
11 Hb_086063_010 0.149208387 - - soluble diacylglycerol acyltransferase [Ricinus communis]
12 Hb_002745_010 0.1533916102 - - PREDICTED: SUMO-conjugating enzyme SCE1 [Cucumis sativus]
13 Hb_000265_250 0.1539652293 - - auxilin, putative [Ricinus communis]
14 Hb_000260_090 0.1545313337 - - PREDICTED: ubiquitin-conjugating enzyme E2 28 [Gossypium raimondii]
15 Hb_001059_100 0.1548001182 - - PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1 [Jatropha curcas]
16 Hb_017075_030 0.1561814877 - - helicase, putative [Ricinus communis]
17 Hb_002813_010 0.1580505298 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
18 Hb_001301_320 0.1583709451 - - PREDICTED: uncharacterized protein LOC105632955 [Jatropha curcas]
19 Hb_000798_060 0.1588503659 transcription factor TF Family: PHD -
20 Hb_000449_050 0.1593736537 - - Protein bem46, putative [Ricinus communis]

Gene co-expression network

sample Hb_002626_040 Hb_002626_040 Hb_003906_190 Hb_003906_190 Hb_002626_040--Hb_003906_190 Hb_032202_240 Hb_032202_240 Hb_002626_040--Hb_032202_240 Hb_002477_150 Hb_002477_150 Hb_002626_040--Hb_002477_150 Hb_006316_070 Hb_006316_070 Hb_002626_040--Hb_006316_070 Hb_011465_030 Hb_011465_030 Hb_002626_040--Hb_011465_030 Hb_002977_010 Hb_002977_010 Hb_002626_040--Hb_002977_010 Hb_003906_190--Hb_011465_030 Hb_000265_250 Hb_000265_250 Hb_003906_190--Hb_000265_250 Hb_003906_190--Hb_002477_150 Hb_001247_230 Hb_001247_230 Hb_003906_190--Hb_001247_230 Hb_025306_010 Hb_025306_010 Hb_003906_190--Hb_025306_010 Hb_032202_240--Hb_002977_010 Hb_001946_300 Hb_001946_300 Hb_032202_240--Hb_001946_300 Hb_001616_050 Hb_001616_050 Hb_032202_240--Hb_001616_050 Hb_000331_160 Hb_000331_160 Hb_032202_240--Hb_000331_160 Hb_017075_030 Hb_017075_030 Hb_032202_240--Hb_017075_030 Hb_025477_060 Hb_025477_060 Hb_032202_240--Hb_025477_060 Hb_002477_150--Hb_011465_030 Hb_148209_020 Hb_148209_020 Hb_002477_150--Hb_148209_020 Hb_005946_170 Hb_005946_170 Hb_002477_150--Hb_005946_170 Hb_002477_150--Hb_000265_250 Hb_002659_060 Hb_002659_060 Hb_002477_150--Hb_002659_060 Hb_002477_150--Hb_001946_300 Hb_002849_080 Hb_002849_080 Hb_006316_070--Hb_002849_080 Hb_006316_070--Hb_002977_010 Hb_006316_070--Hb_148209_020 Hb_002813_010 Hb_002813_010 Hb_006316_070--Hb_002813_010 Hb_006316_070--Hb_002477_150 Hb_001584_170 Hb_001584_170 Hb_006316_070--Hb_001584_170 Hb_011465_030--Hb_000265_250 Hb_007403_050 Hb_007403_050 Hb_011465_030--Hb_007403_050 Hb_011465_030--Hb_001946_300 Hb_011465_030--Hb_002849_080 Hb_000540_120 Hb_000540_120 Hb_011465_030--Hb_000540_120 Hb_003878_140 Hb_003878_140 Hb_002977_010--Hb_003878_140 Hb_002977_010--Hb_001616_050 Hb_002977_010--Hb_002849_080 Hb_002977_010--Hb_148209_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.7965 30.3131 4.84221 5.36918 22.7328 25.0358
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.139 6.23159 4.59709 3.62688 4.30619

CAGE analysis