Hb_004096_080

Information

Type -
Description -
Location Contig4096: 100778-102606
Sequence    

Annotation

kegg
ID tcc:TCM_019471
description Regulator of Vps4 activity in the MVB pathway protein, putative
nr
ID XP_012077963.1
description PREDICTED: IST1 homolog [Jatropha curcas]
swissprot
ID Q54I39
description IST1-like protein OS=Dictyostelium discoideum GN=DDB_G0289029 PE=3 SV=1
trembl
ID A0A061EIJ4
description Regulator of Vps4 activity in the MVB pathway protein, putative OS=Theobroma cacao GN=TCM_019471 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004096_080 0.0 - - PREDICTED: IST1 homolog [Jatropha curcas]
2 Hb_001396_260 0.1117736662 - - PREDICTED: F-box only protein 6 [Jatropha curcas]
3 Hb_084429_010 0.1170239866 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Populus euphratica]
4 Hb_015763_020 0.1325143346 - - PREDICTED: uncharacterized protein LOC105637166 [Jatropha curcas]
5 Hb_002078_420 0.1388420125 - - PREDICTED: F-box only protein 6 [Jatropha curcas]
6 Hb_114310_040 0.1425842281 - - PREDICTED: purple acid phosphatase 2-like [Jatropha curcas]
7 Hb_011861_070 0.1524852128 - - F-box/LRR-repeat protein, putative [Ricinus communis]
8 Hb_026437_010 0.1564546769 - - -
9 Hb_002400_400 0.156956939 - - PREDICTED: topless-related protein 1-like isoform X3 [Jatropha curcas]
10 Hb_000449_050 0.15753023 - - Protein bem46, putative [Ricinus communis]
11 Hb_005122_080 0.1577026345 - - prokaryotic DNA topoisomerase, putative [Ricinus communis]
12 Hb_003073_200 0.1603724491 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
13 Hb_001140_250 0.1613247608 - - KDEL motif-containing protein 1 precursor, putative [Ricinus communis]
14 Hb_004136_040 0.1621790058 - - putative protein kinase [Arabidopsis thaliana]
15 Hb_000120_610 0.1637556051 - - mitotic control protein dis3, putative [Ricinus communis]
16 Hb_000181_180 0.1638411419 - - PREDICTED: uncharacterized protein LOC105637608 [Jatropha curcas]
17 Hb_000029_160 0.1647840935 - - Nitrilase, putative [Ricinus communis]
18 Hb_003206_030 0.1673094311 - - PREDICTED: uncharacterized protein LOC105632652 [Jatropha curcas]
19 Hb_006316_070 0.1674525969 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
20 Hb_002477_150 0.1680346987 transcription factor TF Family: Alfin-like DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004096_080 Hb_004096_080 Hb_001396_260 Hb_001396_260 Hb_004096_080--Hb_001396_260 Hb_084429_010 Hb_084429_010 Hb_004096_080--Hb_084429_010 Hb_015763_020 Hb_015763_020 Hb_004096_080--Hb_015763_020 Hb_002078_420 Hb_002078_420 Hb_004096_080--Hb_002078_420 Hb_114310_040 Hb_114310_040 Hb_004096_080--Hb_114310_040 Hb_011861_070 Hb_011861_070 Hb_004096_080--Hb_011861_070 Hb_001396_260--Hb_084429_010 Hb_001396_260--Hb_015763_020 Hb_031089_030 Hb_031089_030 Hb_001396_260--Hb_031089_030 Hb_003157_010 Hb_003157_010 Hb_001396_260--Hb_003157_010 Hb_009028_030 Hb_009028_030 Hb_001396_260--Hb_009028_030 Hb_084429_010--Hb_031089_030 Hb_007257_050 Hb_007257_050 Hb_084429_010--Hb_007257_050 Hb_000375_370 Hb_000375_370 Hb_084429_010--Hb_000375_370 Hb_002849_080 Hb_002849_080 Hb_084429_010--Hb_002849_080 Hb_000227_380 Hb_000227_380 Hb_015763_020--Hb_000227_380 Hb_000264_100 Hb_000264_100 Hb_015763_020--Hb_000264_100 Hb_000120_610 Hb_000120_610 Hb_015763_020--Hb_000120_610 Hb_000002_440 Hb_000002_440 Hb_015763_020--Hb_000002_440 Hb_004899_070 Hb_004899_070 Hb_015763_020--Hb_004899_070 Hb_000594_020 Hb_000594_020 Hb_015763_020--Hb_000594_020 Hb_000029_160 Hb_000029_160 Hb_002078_420--Hb_000029_160 Hb_000172_550 Hb_000172_550 Hb_002078_420--Hb_000172_550 Hb_000016_280 Hb_000016_280 Hb_002078_420--Hb_000016_280 Hb_013753_010 Hb_013753_010 Hb_002078_420--Hb_013753_010 Hb_000331_480 Hb_000331_480 Hb_002078_420--Hb_000331_480 Hb_000076_290 Hb_000076_290 Hb_002078_420--Hb_000076_290 Hb_011218_080 Hb_011218_080 Hb_114310_040--Hb_011218_080 Hb_000920_270 Hb_000920_270 Hb_114310_040--Hb_000920_270 Hb_114310_040--Hb_002078_420 Hb_114310_040--Hb_011861_070 Hb_005052_010 Hb_005052_010 Hb_114310_040--Hb_005052_010 Hb_010080_060 Hb_010080_060 Hb_011861_070--Hb_010080_060 Hb_003866_020 Hb_003866_020 Hb_011861_070--Hb_003866_020 Hb_000078_100 Hb_000078_100 Hb_011861_070--Hb_000078_100 Hb_005635_010 Hb_005635_010 Hb_011861_070--Hb_005635_010 Hb_002725_070 Hb_002725_070 Hb_011861_070--Hb_002725_070 Hb_011861_070--Hb_000227_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.51636 5.75366 0.689295 0.653896 5.61343 5.01173
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.66577 2.00083 0.679792 4.44451 0.252332

CAGE analysis