Hb_000920_270

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig920: 171467-174991
Sequence    

Annotation

kegg
ID pop:POPTR_0001s06650g
description POPTRDRAFT_178418; hypothetical protein
nr
ID KDP40522.1
description hypothetical protein JCGZ_24521 [Jatropha curcas]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID A0A067KWI6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24521 PE=4 SV=1
Gene Ontology
ID GO:0003824
description disease resistance rpp13-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62426: 175957-178701
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000920_270 0.0 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_24521 [Jatropha curcas]
2 Hb_000398_190 0.1273426504 - - PREDICTED: outer envelope protein 64, mitochondrial [Jatropha curcas]
3 Hb_114310_040 0.1299530096 - - PREDICTED: purple acid phosphatase 2-like [Jatropha curcas]
4 Hb_006478_110 0.1335338119 - - type I inositol polyphosphate 5-phosphatase, putative [Ricinus communis]
5 Hb_000490_030 0.1390080085 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
6 Hb_011671_330 0.140967886 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 4 [Jatropha curcas]
7 Hb_006091_030 0.143792104 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Jatropha curcas]
8 Hb_000107_100 0.1451461863 - - hypothetical protein JCGZ_16208 [Jatropha curcas]
9 Hb_005839_120 0.1453603053 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
10 Hb_029281_010 0.1456515291 - - hypothetical protein JCGZ_04025 [Jatropha curcas]
11 Hb_000413_130 0.1461199869 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
12 Hb_001817_180 0.1492473106 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
13 Hb_003581_140 0.1493637142 - - PREDICTED: hypersensitive-induced response protein 1-like [Nelumbo nucifera]
14 Hb_002960_060 0.1507149923 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 28 [Jatropha curcas]
15 Hb_000358_080 0.1546574632 - - Ribonuclease 3 [Gossypium arboreum]
16 Hb_001504_160 0.1586258704 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
17 Hb_011612_010 0.1586413097 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
18 Hb_082609_020 0.1587050209 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002701_080 0.1590257027 - - PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Jatropha curcas]
20 Hb_012654_010 0.1602925604 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]

Gene co-expression network

sample Hb_000920_270 Hb_000920_270 Hb_000398_190 Hb_000398_190 Hb_000920_270--Hb_000398_190 Hb_114310_040 Hb_114310_040 Hb_000920_270--Hb_114310_040 Hb_006478_110 Hb_006478_110 Hb_000920_270--Hb_006478_110 Hb_000490_030 Hb_000490_030 Hb_000920_270--Hb_000490_030 Hb_011671_330 Hb_011671_330 Hb_000920_270--Hb_011671_330 Hb_006091_030 Hb_006091_030 Hb_000920_270--Hb_006091_030 Hb_002701_080 Hb_002701_080 Hb_000398_190--Hb_002701_080 Hb_001504_160 Hb_001504_160 Hb_000398_190--Hb_001504_160 Hb_012654_010 Hb_012654_010 Hb_000398_190--Hb_012654_010 Hb_011612_010 Hb_011612_010 Hb_000398_190--Hb_011612_010 Hb_000230_330 Hb_000230_330 Hb_000398_190--Hb_000230_330 Hb_000041_220 Hb_000041_220 Hb_000398_190--Hb_000041_220 Hb_011218_080 Hb_011218_080 Hb_114310_040--Hb_011218_080 Hb_002078_420 Hb_002078_420 Hb_114310_040--Hb_002078_420 Hb_011861_070 Hb_011861_070 Hb_114310_040--Hb_011861_070 Hb_004096_080 Hb_004096_080 Hb_114310_040--Hb_004096_080 Hb_005052_010 Hb_005052_010 Hb_114310_040--Hb_005052_010 Hb_000413_130 Hb_000413_130 Hb_006478_110--Hb_000413_130 Hb_006478_110--Hb_011671_330 Hb_000161_030 Hb_000161_030 Hb_006478_110--Hb_000161_030 Hb_001454_060 Hb_001454_060 Hb_006478_110--Hb_001454_060 Hb_002341_030 Hb_002341_030 Hb_006478_110--Hb_002341_030 Hb_006478_110--Hb_012654_010 Hb_001936_050 Hb_001936_050 Hb_000490_030--Hb_001936_050 Hb_029281_010 Hb_029281_010 Hb_000490_030--Hb_029281_010 Hb_000358_080 Hb_000358_080 Hb_000490_030--Hb_000358_080 Hb_000490_030--Hb_006091_030 Hb_000340_510 Hb_000340_510 Hb_000490_030--Hb_000340_510 Hb_002874_070 Hb_002874_070 Hb_000490_030--Hb_002874_070 Hb_011671_330--Hb_000413_130 Hb_029866_130 Hb_029866_130 Hb_011671_330--Hb_029866_130 Hb_011671_330--Hb_029281_010 Hb_001633_110 Hb_001633_110 Hb_011671_330--Hb_001633_110 Hb_004931_040 Hb_004931_040 Hb_011671_330--Hb_004931_040 Hb_006091_030--Hb_000358_080 Hb_006091_030--Hb_002874_070 Hb_000016_110 Hb_000016_110 Hb_006091_030--Hb_000016_110 Hb_006091_030--Hb_000413_130 Hb_000078_130 Hb_000078_130 Hb_006091_030--Hb_000078_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.68259 0.958685 0.333063 0.0533208 2.42498 2.04266
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.648007 0.865953 1.53145 1.35359 0.0823383

CAGE analysis