Hb_005052_010

Information

Type -
Description -
Location Contig5052: 8079-15420
Sequence    

Annotation

kegg
ID pmum:103339315
description uncharacterized LOC103339315
nr
ID XP_008240806.1
description PREDICTED: uncharacterized protein LOC103339315 [Prunus mume]
swissprot
ID -
description -
trembl
ID A0A077CWQ8
description Pol polyprotein (Fragment) OS=Trifolium pallescens PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005052_010 0.0 - - PREDICTED: uncharacterized protein LOC103339315 [Prunus mume]
2 Hb_001633_100 0.1391138595 - - PREDICTED: protein NETWORKED 3A-like [Jatropha curcas]
3 Hb_011344_170 0.1426214063 - - PREDICTED: UDP-glucuronate 4-epimerase 4-like, partial [Camelina sativa]
4 Hb_114310_040 0.1472330411 - - PREDICTED: purple acid phosphatase 2-like [Jatropha curcas]
5 Hb_000120_570 0.1488182488 - - Mlo protein [Hevea brasiliensis]
6 Hb_001529_060 0.1546247409 - - PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Jatropha curcas]
7 Hb_003866_020 0.1603303947 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002849_080 0.1615779325 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
9 Hb_015763_020 0.1619628216 - - PREDICTED: uncharacterized protein LOC105637166 [Jatropha curcas]
10 Hb_005122_060 0.1621111985 - - unnamed protein product [Vitis vinifera]
11 Hb_000827_080 0.1624029067 - - catalytic, putative [Ricinus communis]
12 Hb_005038_020 0.1626716383 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_002078_420 0.1648311337 - - PREDICTED: F-box only protein 6 [Jatropha curcas]
14 Hb_057451_010 0.1650517728 - - PREDICTED: uncharacterized protein LOC105635588 [Jatropha curcas]
15 Hb_000313_340 0.1667612311 - - DNA repair protein xp-E, putative [Ricinus communis]
16 Hb_000685_080 0.1674543948 - - protein binding protein, putative [Ricinus communis]
17 Hb_005510_010 0.1676453691 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
18 Hb_000487_100 0.1686394764 - - PREDICTED: protein unc-45 homolog A [Jatropha curcas]
19 Hb_004017_040 0.1688038696 - - kinetochore protein nuf2, putative [Ricinus communis]
20 Hb_007101_180 0.1690985139 - - PREDICTED: DNA polymerase beta [Jatropha curcas]

Gene co-expression network

sample Hb_005052_010 Hb_005052_010 Hb_001633_100 Hb_001633_100 Hb_005052_010--Hb_001633_100 Hb_011344_170 Hb_011344_170 Hb_005052_010--Hb_011344_170 Hb_114310_040 Hb_114310_040 Hb_005052_010--Hb_114310_040 Hb_000120_570 Hb_000120_570 Hb_005052_010--Hb_000120_570 Hb_001529_060 Hb_001529_060 Hb_005052_010--Hb_001529_060 Hb_003866_020 Hb_003866_020 Hb_005052_010--Hb_003866_020 Hb_000016_280 Hb_000016_280 Hb_001633_100--Hb_000016_280 Hb_183510_010 Hb_183510_010 Hb_001633_100--Hb_183510_010 Hb_000322_170 Hb_000322_170 Hb_001633_100--Hb_000322_170 Hb_000093_130 Hb_000093_130 Hb_001633_100--Hb_000093_130 Hb_002843_100 Hb_002843_100 Hb_001633_100--Hb_002843_100 Hb_000116_570 Hb_000116_570 Hb_001633_100--Hb_000116_570 Hb_007307_030 Hb_007307_030 Hb_011344_170--Hb_007307_030 Hb_164010_070 Hb_164010_070 Hb_011344_170--Hb_164010_070 Hb_000853_120 Hb_000853_120 Hb_011344_170--Hb_000853_120 Hb_017434_060 Hb_017434_060 Hb_011344_170--Hb_017434_060 Hb_001989_020 Hb_001989_020 Hb_011344_170--Hb_001989_020 Hb_011218_080 Hb_011218_080 Hb_114310_040--Hb_011218_080 Hb_000920_270 Hb_000920_270 Hb_114310_040--Hb_000920_270 Hb_002078_420 Hb_002078_420 Hb_114310_040--Hb_002078_420 Hb_011861_070 Hb_011861_070 Hb_114310_040--Hb_011861_070 Hb_004096_080 Hb_004096_080 Hb_114310_040--Hb_004096_080 Hb_001473_080 Hb_001473_080 Hb_000120_570--Hb_001473_080 Hb_001922_130 Hb_001922_130 Hb_000120_570--Hb_001922_130 Hb_001534_070 Hb_001534_070 Hb_000120_570--Hb_001534_070 Hb_009178_020 Hb_009178_020 Hb_000120_570--Hb_009178_020 Hb_000685_080 Hb_000685_080 Hb_000120_570--Hb_000685_080 Hb_004374_150 Hb_004374_150 Hb_000120_570--Hb_004374_150 Hb_001529_060--Hb_009178_020 Hb_001009_290 Hb_001009_290 Hb_001529_060--Hb_001009_290 Hb_001529_060--Hb_000685_080 Hb_002849_080 Hb_002849_080 Hb_001529_060--Hb_002849_080 Hb_148209_020 Hb_148209_020 Hb_001529_060--Hb_148209_020 Hb_000317_150 Hb_000317_150 Hb_001529_060--Hb_000317_150 Hb_000227_380 Hb_000227_380 Hb_003866_020--Hb_000227_380 Hb_006588_050 Hb_006588_050 Hb_003866_020--Hb_006588_050 Hb_006816_300 Hb_006816_300 Hb_003866_020--Hb_006816_300 Hb_004899_070 Hb_004899_070 Hb_003866_020--Hb_004899_070 Hb_000239_070 Hb_000239_070 Hb_003866_020--Hb_000239_070 Hb_000340_160 Hb_000340_160 Hb_003866_020--Hb_000340_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.493555 0.490771 0.128742 0.0993174 0.747024 0.541136
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0810041 0.10622 0.20047 0.313246 0

CAGE analysis