Hb_017434_060

Information

Type -
Description -
Location Contig17434: 45248-47507
Sequence    

Annotation

kegg
ID rcu:RCOM_0241560
description nonsense-mediated mRNA decay protein, putative
nr
ID XP_012086455.1
description PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
swissprot
ID Q96D46
description 60S ribosomal export protein NMD3 OS=Homo sapiens GN=NMD3 PE=1 SV=1
trembl
ID B9T5L2
description Nonsense-mediated mRNA decay protein, putative OS=Ricinus communis GN=RCOM_0241560 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017434_060 0.0 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
2 Hb_007307_030 0.1262317 - - PREDICTED: myosin-11 isoform X2 [Jatropha curcas]
3 Hb_011311_020 0.1536872224 - - PREDICTED: myosin-11 isoform X2 [Jatropha curcas]
4 Hb_005702_030 0.154101441 - - PREDICTED: TMV resistance protein N-like isoform X2 [Vitis vinifera]
5 Hb_002007_240 0.1579754165 - - PREDICTED: F-box protein At1g55000 [Jatropha curcas]
6 Hb_000987_140 0.1590193748 - - PREDICTED: uncharacterized protein LOC105648083 isoform X1 [Jatropha curcas]
7 Hb_011344_170 0.1632948038 - - PREDICTED: UDP-glucuronate 4-epimerase 4-like, partial [Camelina sativa]
8 Hb_009701_010 0.166107974 - - PREDICTED: putative inactive cadmium/zinc-transporting ATPase HMA3 [Jatropha curcas]
9 Hb_164010_070 0.1808163438 - - Paramyosin, putative [Ricinus communis]
10 Hb_000997_090 0.1870569863 - - PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]
11 Hb_012573_080 0.1892542424 - - hypothetical protein JCGZ_13311 [Jatropha curcas]
12 Hb_000077_370 0.1892662112 - - PREDICTED: protein STABILIZED1 [Jatropha curcas]
13 Hb_001989_020 0.1908422673 - - hypothetical protein JCGZ_15521 [Jatropha curcas]
14 Hb_000390_100 0.1918217292 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
15 Hb_000853_030 0.1924083467 - - sucrose synthase 2 [Hevea brasiliensis]
16 Hb_000703_240 0.1932624572 - - -
17 Hb_000616_020 0.1939905556 - - PREDICTED: cysteine desulfurase, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_000270_760 0.1953463441 - - PREDICTED: RNA-dependent RNA polymerase 2 isoform X1 [Jatropha curcas]
19 Hb_000336_140 0.1979442183 - - conserved hypothetical protein [Ricinus communis]
20 Hb_116027_010 0.1980468276 - - PREDICTED: separase [Jatropha curcas]

Gene co-expression network

sample Hb_017434_060 Hb_017434_060 Hb_007307_030 Hb_007307_030 Hb_017434_060--Hb_007307_030 Hb_011311_020 Hb_011311_020 Hb_017434_060--Hb_011311_020 Hb_005702_030 Hb_005702_030 Hb_017434_060--Hb_005702_030 Hb_002007_240 Hb_002007_240 Hb_017434_060--Hb_002007_240 Hb_000987_140 Hb_000987_140 Hb_017434_060--Hb_000987_140 Hb_011344_170 Hb_011344_170 Hb_017434_060--Hb_011344_170 Hb_164010_070 Hb_164010_070 Hb_007307_030--Hb_164010_070 Hb_007307_030--Hb_011311_020 Hb_000077_370 Hb_000077_370 Hb_007307_030--Hb_000077_370 Hb_007307_030--Hb_000987_140 Hb_007307_030--Hb_002007_240 Hb_000330_040 Hb_000330_040 Hb_011311_020--Hb_000330_040 Hb_009701_010 Hb_009701_010 Hb_011311_020--Hb_009701_010 Hb_073562_010 Hb_073562_010 Hb_011311_020--Hb_073562_010 Hb_011311_020--Hb_000987_140 Hb_010874_020 Hb_010874_020 Hb_011311_020--Hb_010874_020 Hb_168697_010 Hb_168697_010 Hb_011311_020--Hb_168697_010 Hb_000050_090 Hb_000050_090 Hb_005702_030--Hb_000050_090 Hb_005702_030--Hb_011344_170 Hb_000703_240 Hb_000703_240 Hb_005702_030--Hb_000703_240 Hb_005702_030--Hb_007307_030 Hb_001769_010 Hb_001769_010 Hb_005702_030--Hb_001769_010 Hb_002007_240--Hb_009701_010 Hb_002400_400 Hb_002400_400 Hb_002007_240--Hb_002400_400 Hb_005214_090 Hb_005214_090 Hb_002007_240--Hb_005214_090 Hb_000270_760 Hb_000270_760 Hb_002007_240--Hb_000270_760 Hb_000200_280 Hb_000200_280 Hb_002007_240--Hb_000200_280 Hb_002110_030 Hb_002110_030 Hb_002007_240--Hb_002110_030 Hb_012573_080 Hb_012573_080 Hb_000987_140--Hb_012573_080 Hb_000836_270 Hb_000836_270 Hb_000987_140--Hb_000836_270 Hb_042038_020 Hb_042038_020 Hb_000987_140--Hb_042038_020 Hb_000418_070 Hb_000418_070 Hb_000987_140--Hb_000418_070 Hb_005914_150 Hb_005914_150 Hb_000987_140--Hb_005914_150 Hb_005052_010 Hb_005052_010 Hb_011344_170--Hb_005052_010 Hb_011344_170--Hb_007307_030 Hb_011344_170--Hb_164010_070 Hb_000853_120 Hb_000853_120 Hb_011344_170--Hb_000853_120 Hb_001989_020 Hb_001989_020 Hb_011344_170--Hb_001989_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.2152 27.7595 1.83934 2.82557 11.4474 13.0839
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.54666 3.67558 22.7244 19.7577 1.14227

CAGE analysis