Hb_005702_030

Information

Type -
Description -
Location Contig5702: 52902-59643
Sequence    

Annotation

kegg
ID vvi:100246324
description TMV resistance protein N-like
nr
ID XP_010657771.1
description PREDICTED: TMV resistance protein N-like isoform X2 [Vitis vinifera]
swissprot
ID O23530
description Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3
trembl
ID F6I7C2
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0238g00040 PE=4 SV=1
Gene Ontology
ID GO:0005515
description tmv resistance protein n-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005702_030 0.0 - - PREDICTED: TMV resistance protein N-like isoform X2 [Vitis vinifera]
2 Hb_017434_060 0.154101441 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
3 Hb_000050_090 0.1704998347 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
4 Hb_011344_170 0.1773465328 - - PREDICTED: UDP-glucuronate 4-epimerase 4-like, partial [Camelina sativa]
5 Hb_000703_240 0.1783529489 - - -
6 Hb_007307_030 0.1841873048 - - PREDICTED: myosin-11 isoform X2 [Jatropha curcas]
7 Hb_001769_010 0.1991054769 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002804_050 0.1994957373 - - PREDICTED: uncharacterized protein LOC105628258 [Jatropha curcas]
9 Hb_000050_100 0.2017283643 - - PREDICTED: homeobox protein knotted-1-like 2 [Jatropha curcas]
10 Hb_164010_070 0.2032573489 - - Paramyosin, putative [Ricinus communis]
11 Hb_054328_010 0.2035723369 - - hypothetical protein POPTR_0019s09820g [Populus trichocarpa]
12 Hb_000853_030 0.2053087962 - - sucrose synthase 2 [Hevea brasiliensis]
13 Hb_017987_090 0.2060240705 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 2 [Jatropha curcas]
14 Hb_026698_010 0.2096151127 - - 2,4-dienoyl-CoA reductase, putative [Ricinus communis]
15 Hb_001274_020 0.2117563217 desease resistance Gene Name: ABC_tran ABC transporter GCN1 [Hevea brasiliensis]
16 Hb_005565_010 0.2124797904 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
17 Hb_000336_140 0.2133779053 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002843_050 0.214185097 - - scab resistance family protein [Populus trichocarpa]
19 Hb_010128_090 0.2142687522 - - PREDICTED: uncharacterized protein LOC105647377 [Jatropha curcas]
20 Hb_084429_010 0.215018386 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Populus euphratica]

Gene co-expression network

sample Hb_005702_030 Hb_005702_030 Hb_017434_060 Hb_017434_060 Hb_005702_030--Hb_017434_060 Hb_000050_090 Hb_000050_090 Hb_005702_030--Hb_000050_090 Hb_011344_170 Hb_011344_170 Hb_005702_030--Hb_011344_170 Hb_000703_240 Hb_000703_240 Hb_005702_030--Hb_000703_240 Hb_007307_030 Hb_007307_030 Hb_005702_030--Hb_007307_030 Hb_001769_010 Hb_001769_010 Hb_005702_030--Hb_001769_010 Hb_017434_060--Hb_007307_030 Hb_011311_020 Hb_011311_020 Hb_017434_060--Hb_011311_020 Hb_002007_240 Hb_002007_240 Hb_017434_060--Hb_002007_240 Hb_000987_140 Hb_000987_140 Hb_017434_060--Hb_000987_140 Hb_017434_060--Hb_011344_170 Hb_000050_100 Hb_000050_100 Hb_000050_090--Hb_000050_100 Hb_017987_090 Hb_017987_090 Hb_000050_090--Hb_017987_090 Hb_000703_060 Hb_000703_060 Hb_000050_090--Hb_000703_060 Hb_000050_090--Hb_000703_240 Hb_000050_090--Hb_011344_170 Hb_005052_010 Hb_005052_010 Hb_011344_170--Hb_005052_010 Hb_011344_170--Hb_007307_030 Hb_164010_070 Hb_164010_070 Hb_011344_170--Hb_164010_070 Hb_000853_120 Hb_000853_120 Hb_011344_170--Hb_000853_120 Hb_001989_020 Hb_001989_020 Hb_011344_170--Hb_001989_020 Hb_000497_180 Hb_000497_180 Hb_000703_240--Hb_000497_180 Hb_026698_010 Hb_026698_010 Hb_000703_240--Hb_026698_010 Hb_000640_300 Hb_000640_300 Hb_000703_240--Hb_000640_300 Hb_000589_400 Hb_000589_400 Hb_000703_240--Hb_000589_400 Hb_007307_030--Hb_164010_070 Hb_007307_030--Hb_011311_020 Hb_000077_370 Hb_000077_370 Hb_007307_030--Hb_000077_370 Hb_007307_030--Hb_000987_140 Hb_007307_030--Hb_002007_240 Hb_010128_090 Hb_010128_090 Hb_001769_010--Hb_010128_090 Hb_000865_080 Hb_000865_080 Hb_001769_010--Hb_000865_080 Hb_155702_010 Hb_155702_010 Hb_001769_010--Hb_155702_010 Hb_023827_040 Hb_023827_040 Hb_001769_010--Hb_023827_040 Hb_003878_140 Hb_003878_140 Hb_001769_010--Hb_003878_140 Hb_000224_060 Hb_000224_060 Hb_001769_010--Hb_000224_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.2896 6.8432 0.0281375 0.404577 2.32595 2.74711
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.95587 1.07059 2.92249 3.07312 0.177033

CAGE analysis