Hb_000640_300

Information

Type transcription factor
Description TF Family: WRKY
Location Contig640: 277037-279068
Sequence    

Annotation

kegg
ID rcu:RCOM_1346340
description WRKY transcription factor, putative
nr
ID ADF45433.1
description WRKY1 [Hevea brasiliensis]
swissprot
ID O22900
description Probable WRKY transcription factor 23 OS=Arabidopsis thaliana GN=WRKY23 PE=2 SV=1
trembl
ID G8Z9V5
description WRKY1 OS=Hevea brasiliensis GN=WRKY1 PE=2 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52131: 277627-278345
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000640_300 0.0 transcription factor TF Family: WRKY WRKY1 [Hevea brasiliensis]
2 Hb_000589_400 0.1299526502 - - ESC, putative [Ricinus communis]
3 Hb_000243_140 0.1587725814 transcription factor TF Family: SRS Lateral root primordium protein-related, putative [Theobroma cacao]
4 Hb_007451_020 0.1591446202 - - PREDICTED: U1 small nuclear ribonucleoprotein C [Jatropha curcas]
5 Hb_028872_060 0.1636448142 - - PREDICTED: ankyrin-3-like [Jatropha curcas]
6 Hb_001150_040 0.1651187785 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Solanum lycopersicum]
7 Hb_004230_040 0.1661685778 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002400_400 0.1720564195 - - PREDICTED: topless-related protein 1-like isoform X3 [Jatropha curcas]
9 Hb_000703_240 0.1766398397 - - -
10 Hb_000116_230 0.1774662848 - - -
11 Hb_004225_180 0.1777939649 - - bel1 homeotic protein, putative [Ricinus communis]
12 Hb_004738_020 0.1814170026 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001529_050 0.1836795729 - - PREDICTED: ribulose bisphosphate carboxylase small chain clone 512-like [Jatropha curcas]
14 Hb_026698_010 0.1847481921 - - 2,4-dienoyl-CoA reductase, putative [Ricinus communis]
15 Hb_001117_070 0.1873116903 - - 30S ribosomal protein S19, putative [Ricinus communis]
16 Hb_009701_010 0.1896105318 - - PREDICTED: putative inactive cadmium/zinc-transporting ATPase HMA3 [Jatropha curcas]
17 Hb_002435_110 0.1950206495 transcription factor TF Family: SNF2 PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Jatropha curcas]
18 Hb_138585_110 0.1955961769 - - -
19 Hb_002007_240 0.1975802941 - - PREDICTED: F-box protein At1g55000 [Jatropha curcas]
20 Hb_012052_060 0.1976851505 - - hypothetical protein POPTR_0018s10190g [Populus trichocarpa]

Gene co-expression network

sample Hb_000640_300 Hb_000640_300 Hb_000589_400 Hb_000589_400 Hb_000640_300--Hb_000589_400 Hb_000243_140 Hb_000243_140 Hb_000640_300--Hb_000243_140 Hb_007451_020 Hb_007451_020 Hb_000640_300--Hb_007451_020 Hb_028872_060 Hb_028872_060 Hb_000640_300--Hb_028872_060 Hb_001150_040 Hb_001150_040 Hb_000640_300--Hb_001150_040 Hb_004230_040 Hb_004230_040 Hb_000640_300--Hb_004230_040 Hb_000703_240 Hb_000703_240 Hb_000589_400--Hb_000703_240 Hb_054328_010 Hb_054328_010 Hb_000589_400--Hb_054328_010 Hb_000589_400--Hb_000243_140 Hb_026698_010 Hb_026698_010 Hb_000589_400--Hb_026698_010 Hb_000589_400--Hb_007451_020 Hb_009510_040 Hb_009510_040 Hb_000243_140--Hb_009510_040 Hb_001117_070 Hb_001117_070 Hb_000243_140--Hb_001117_070 Hb_001619_080 Hb_001619_080 Hb_000243_140--Hb_001619_080 Hb_005333_150 Hb_005333_150 Hb_000243_140--Hb_005333_150 Hb_003052_220 Hb_003052_220 Hb_000243_140--Hb_003052_220 Hb_004242_190 Hb_004242_190 Hb_007451_020--Hb_004242_190 Hb_005625_060 Hb_005625_060 Hb_007451_020--Hb_005625_060 Hb_007451_020--Hb_005333_150 Hb_004800_070 Hb_004800_070 Hb_007451_020--Hb_004800_070 Hb_007451_020--Hb_000243_140 Hb_028872_060--Hb_001150_040 Hb_028872_060--Hb_004242_190 Hb_028872_060--Hb_004230_040 Hb_000009_620 Hb_000009_620 Hb_028872_060--Hb_000009_620 Hb_155123_010 Hb_155123_010 Hb_028872_060--Hb_155123_010 Hb_004738_020 Hb_004738_020 Hb_001150_040--Hb_004738_020 Hb_000203_180 Hb_000203_180 Hb_001150_040--Hb_000203_180 Hb_004225_180 Hb_004225_180 Hb_001150_040--Hb_004225_180 Hb_012052_060 Hb_012052_060 Hb_001150_040--Hb_012052_060 Hb_002028_220 Hb_002028_220 Hb_004230_040--Hb_002028_220 Hb_000390_150 Hb_000390_150 Hb_004230_040--Hb_000390_150 Hb_000923_050 Hb_000923_050 Hb_004230_040--Hb_000923_050 Hb_001902_190 Hb_001902_190 Hb_004230_040--Hb_001902_190 Hb_002400_400 Hb_002400_400 Hb_004230_040--Hb_002400_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.4846 36.0619 1.75438 2.09611 16.7483 23.2748
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.5935 30.449 23.1251 48.4936 0.22246

CAGE analysis