Hb_001902_190

Information

Type -
Description -
Location Contig1902: 145336-148847
Sequence    

Annotation

kegg
ID rcu:RCOM_1495910
description AMP dependent CoA ligase, putative (EC:6.2.1.26)
nr
ID XP_012090254.1
description PREDICTED: oxalate--CoA ligase [Jatropha curcas]
swissprot
ID Q9SMT7
description Oxalate--CoA ligase OS=Arabidopsis thaliana GN=AAE3 PE=1 SV=1
trembl
ID A0A067JRX3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26105 PE=4 SV=1
Gene Ontology
ID GO:0008756
description amp-dependent synthetase and ligase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18975: 145499-148852
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001902_190 0.0 - - PREDICTED: oxalate--CoA ligase [Jatropha curcas]
2 Hb_004230_040 0.1391308298 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000227_060 0.1417144687 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
4 Hb_000451_070 0.1422971019 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
5 Hb_115241_010 0.1485864583 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
6 Hb_002961_060 0.1516328352 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 [Populus euphratica]
7 Hb_002042_130 0.1537971297 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
8 Hb_021888_050 0.1551443086 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
9 Hb_000016_100 0.16143124 transcription factor TF Family: TCP PREDICTED: transcription factor TCP19 [Jatropha curcas]
10 Hb_073395_010 0.1634168306 - - -
11 Hb_000649_240 0.1642205063 - - PREDICTED: probable peroxygenase 4 [Jatropha curcas]
12 Hb_002301_380 0.1651163925 - - PREDICTED: VQ motif-containing protein 4 [Jatropha curcas]
13 Hb_028487_020 0.1651329056 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]
14 Hb_001269_690 0.1654200925 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000796_250 0.1670419347 transcription factor TF Family: WRKY WRKY1 [Hevea brasiliensis]
16 Hb_000905_170 0.1676154069 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
17 Hb_001183_010 0.168802013 - - -
18 Hb_000390_150 0.1690872977 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105632469 [Jatropha curcas]
19 Hb_001481_120 0.1693579371 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
20 Hb_000432_040 0.1706328511 - - PREDICTED: remorin-like [Jatropha curcas]

Gene co-expression network

sample Hb_001902_190 Hb_001902_190 Hb_004230_040 Hb_004230_040 Hb_001902_190--Hb_004230_040 Hb_000227_060 Hb_000227_060 Hb_001902_190--Hb_000227_060 Hb_000451_070 Hb_000451_070 Hb_001902_190--Hb_000451_070 Hb_115241_010 Hb_115241_010 Hb_001902_190--Hb_115241_010 Hb_002961_060 Hb_002961_060 Hb_001902_190--Hb_002961_060 Hb_002042_130 Hb_002042_130 Hb_001902_190--Hb_002042_130 Hb_002028_220 Hb_002028_220 Hb_004230_040--Hb_002028_220 Hb_000390_150 Hb_000390_150 Hb_004230_040--Hb_000390_150 Hb_000923_050 Hb_000923_050 Hb_004230_040--Hb_000923_050 Hb_028872_060 Hb_028872_060 Hb_004230_040--Hb_028872_060 Hb_002400_400 Hb_002400_400 Hb_004230_040--Hb_002400_400 Hb_000905_170 Hb_000905_170 Hb_000227_060--Hb_000905_170 Hb_000200_280 Hb_000200_280 Hb_000227_060--Hb_000200_280 Hb_000390_100 Hb_000390_100 Hb_000227_060--Hb_000390_100 Hb_049436_010 Hb_049436_010 Hb_000227_060--Hb_049436_010 Hb_001514_130 Hb_001514_130 Hb_000227_060--Hb_001514_130 Hb_000856_180 Hb_000856_180 Hb_000227_060--Hb_000856_180 Hb_000402_210 Hb_000402_210 Hb_000451_070--Hb_000402_210 Hb_001894_050 Hb_001894_050 Hb_000451_070--Hb_001894_050 Hb_088753_010 Hb_088753_010 Hb_000451_070--Hb_088753_010 Hb_189208_020 Hb_189208_020 Hb_000451_070--Hb_189208_020 Hb_000451_070--Hb_002042_130 Hb_001153_180 Hb_001153_180 Hb_000451_070--Hb_001153_180 Hb_000975_360 Hb_000975_360 Hb_115241_010--Hb_000975_360 Hb_001564_080 Hb_001564_080 Hb_115241_010--Hb_001564_080 Hb_115241_010--Hb_001894_050 Hb_001189_140 Hb_001189_140 Hb_115241_010--Hb_001189_140 Hb_021888_050 Hb_021888_050 Hb_115241_010--Hb_021888_050 Hb_005653_060 Hb_005653_060 Hb_115241_010--Hb_005653_060 Hb_170487_020 Hb_170487_020 Hb_002961_060--Hb_170487_020 Hb_074715_010 Hb_074715_010 Hb_002961_060--Hb_074715_010 Hb_005048_130 Hb_005048_130 Hb_002961_060--Hb_005048_130 Hb_004143_040 Hb_004143_040 Hb_002961_060--Hb_004143_040 Hb_009564_030 Hb_009564_030 Hb_002961_060--Hb_009564_030 Hb_000227_240 Hb_000227_240 Hb_002961_060--Hb_000227_240 Hb_000538_230 Hb_000538_230 Hb_002042_130--Hb_000538_230 Hb_000302_260 Hb_000302_260 Hb_002042_130--Hb_000302_260 Hb_034688_020 Hb_034688_020 Hb_002042_130--Hb_034688_020 Hb_000649_110 Hb_000649_110 Hb_002042_130--Hb_000649_110 Hb_001159_110 Hb_001159_110 Hb_002042_130--Hb_001159_110 Hb_005074_030 Hb_005074_030 Hb_002042_130--Hb_005074_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0417 27.6895 2.14842 11.6085 7.23295 8.20103
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.7 15.5603 9.72942 20.7704 1.86105

CAGE analysis