Hb_002961_060

Information

Type -
Description -
Location Contig2961: 103182-104853
Sequence    

Annotation

kegg
ID pop:POPTR_0009s07990g
description hypothetical protein
nr
ID XP_011024904.1
description PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 [Populus euphratica]
swissprot
ID Q9LMK2
description Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana GN=LSH6 PE=1 SV=1
trembl
ID B9HNA6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s07990g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002961_060 0.0 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 [Populus euphratica]
2 Hb_170487_020 0.1098294114 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
3 Hb_074715_010 0.1150602448 - - PREDICTED: disease resistance protein RPS6-like isoform X2 [Jatropha curcas]
4 Hb_005048_130 0.1168819359 - - hypothetical protein POPTR_0004s03700g [Populus trichocarpa]
5 Hb_004143_040 0.1202820434 - - argininosuccinate lyase, putative [Ricinus communis]
6 Hb_009564_030 0.1245136174 transcription factor TF Family: bHLH Transcription factor AtMYC2, putative [Ricinus communis]
7 Hb_000227_240 0.1251911213 - - hypothetical protein JCGZ_02139 [Jatropha curcas]
8 Hb_000413_010 0.126072099 - - hypothetical protein JCGZ_21316 [Jatropha curcas]
9 Hb_003373_030 0.1285085792 - - PREDICTED: serine/threonine-protein kinase ATG1 [Jatropha curcas]
10 Hb_005306_190 0.1294774374 - - Mitochondrial import inner membrane translocase subunit tim23, putative [Ricinus communis]
11 Hb_000856_180 0.1305452895 - - calcium-dependent protein kinase [Hevea brasiliensis]
12 Hb_012753_130 0.1309032303 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000430_020 0.1312208393 - - -
14 Hb_009627_030 0.1314910997 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
15 Hb_001840_090 0.131584898 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
16 Hb_000538_230 0.1334697961 - - PREDICTED: auxin response factor 8 isoform X1 [Jatropha curcas]
17 Hb_000023_280 0.1341784909 - - hypothetical protein POPTR_0006s28210g [Populus trichocarpa]
18 Hb_005000_260 0.1342621804 - - recA family protein [Populus trichocarpa]
19 Hb_009767_100 0.1358767208 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
20 Hb_006922_010 0.136535256 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]

Gene co-expression network

sample Hb_002961_060 Hb_002961_060 Hb_170487_020 Hb_170487_020 Hb_002961_060--Hb_170487_020 Hb_074715_010 Hb_074715_010 Hb_002961_060--Hb_074715_010 Hb_005048_130 Hb_005048_130 Hb_002961_060--Hb_005048_130 Hb_004143_040 Hb_004143_040 Hb_002961_060--Hb_004143_040 Hb_009564_030 Hb_009564_030 Hb_002961_060--Hb_009564_030 Hb_000227_240 Hb_000227_240 Hb_002961_060--Hb_000227_240 Hb_170487_020--Hb_005048_130 Hb_001005_190 Hb_001005_190 Hb_170487_020--Hb_001005_190 Hb_008103_060 Hb_008103_060 Hb_170487_020--Hb_008103_060 Hb_003370_030 Hb_003370_030 Hb_170487_020--Hb_003370_030 Hb_170487_020--Hb_009564_030 Hb_002043_140 Hb_002043_140 Hb_170487_020--Hb_002043_140 Hb_005269_040 Hb_005269_040 Hb_074715_010--Hb_005269_040 Hb_074715_010--Hb_005048_130 Hb_002662_020 Hb_002662_020 Hb_074715_010--Hb_002662_020 Hb_001377_270 Hb_001377_270 Hb_074715_010--Hb_001377_270 Hb_074715_010--Hb_004143_040 Hb_028962_020 Hb_028962_020 Hb_074715_010--Hb_028962_020 Hb_028285_010 Hb_028285_010 Hb_005048_130--Hb_028285_010 Hb_000062_070 Hb_000062_070 Hb_005048_130--Hb_000062_070 Hb_112798_020 Hb_112798_020 Hb_005048_130--Hb_112798_020 Hb_001408_040 Hb_001408_040 Hb_005048_130--Hb_001408_040 Hb_010997_080 Hb_010997_080 Hb_005048_130--Hb_010997_080 Hb_000530_010 Hb_000530_010 Hb_005048_130--Hb_000530_010 Hb_000023_280 Hb_000023_280 Hb_004143_040--Hb_000023_280 Hb_000116_410 Hb_000116_410 Hb_004143_040--Hb_000116_410 Hb_003373_030 Hb_003373_030 Hb_004143_040--Hb_003373_030 Hb_004143_040--Hb_002662_020 Hb_003761_010 Hb_003761_010 Hb_004143_040--Hb_003761_010 Hb_001205_240 Hb_001205_240 Hb_004143_040--Hb_001205_240 Hb_012807_050 Hb_012807_050 Hb_009564_030--Hb_012807_050 Hb_000229_020 Hb_000229_020 Hb_009564_030--Hb_000229_020 Hb_000322_150 Hb_000322_150 Hb_009564_030--Hb_000322_150 Hb_000592_090 Hb_000592_090 Hb_009564_030--Hb_000592_090 Hb_076693_020 Hb_076693_020 Hb_009564_030--Hb_076693_020 Hb_093084_060 Hb_093084_060 Hb_000227_240--Hb_093084_060 Hb_004785_060 Hb_004785_060 Hb_000227_240--Hb_004785_060 Hb_002400_310 Hb_002400_310 Hb_000227_240--Hb_002400_310 Hb_000179_130 Hb_000179_130 Hb_000227_240--Hb_000179_130 Hb_000260_270 Hb_000260_270 Hb_000227_240--Hb_000260_270 Hb_004545_140 Hb_004545_140 Hb_000227_240--Hb_004545_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.0667 37.0981 6.62416 27.6945 13.196 19.9849
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.1538 28.5966 22.9164 24.8184 4.27094

CAGE analysis