Hb_000530_010

Information

Type -
Description -
Location Contig530: 8802-12998
Sequence    

Annotation

kegg
ID cic:CICLE_v10001120mg
description hypothetical protein
nr
ID XP_012092756.1
description PREDICTED: uncharacterized WD repeat-containing protein C2A9.03 [Jatropha curcas]
swissprot
ID Q9Y7K5
description Uncharacterized WD repeat-containing protein C2A9.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC2A9.03 PE=3 SV=2
trembl
ID A0A067JBZ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47303: 9594-10360 , PASA_asmbl_47304: 10536-10768 , PASA_asmbl_47305: 10769-11233 , PASA_asmbl_47306: 11686-11942 , PASA_asmbl_47307: 12025-12285 , PASA_asmbl_47308: 12314-13307
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000530_010 0.0 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03 [Jatropha curcas]
2 Hb_005048_130 0.0809349207 - - hypothetical protein POPTR_0004s03700g [Populus trichocarpa]
3 Hb_000062_070 0.1028779311 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
4 Hb_000191_150 0.1055415511 - - PREDICTED: uncharacterized protein LOC105637951 [Jatropha curcas]
5 Hb_000116_410 0.1090766241 - - hypothetical protein JCGZ_22416 [Jatropha curcas]
6 Hb_074715_010 0.1105127342 - - PREDICTED: disease resistance protein RPS6-like isoform X2 [Jatropha curcas]
7 Hb_112798_020 0.1121792268 - - dnajc14 protein, putative [Ricinus communis]
8 Hb_170487_020 0.1162953237 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
9 Hb_028285_010 0.1172750163 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
10 Hb_002662_020 0.1180795051 - - PREDICTED: F-box protein At1g47056-like [Jatropha curcas]
11 Hb_001123_050 0.1181334225 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000213_120 0.118516532 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_001178_070 0.1206922683 - - PREDICTED: BTB/POZ domain-containing protein FBL11 [Jatropha curcas]
14 Hb_017491_030 0.1209456552 - - PREDICTED: 40S ribosomal protein SA-like [Jatropha curcas]
15 Hb_013738_020 0.1211225231 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
16 Hb_002391_270 0.1212914627 - - PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]
17 Hb_000175_100 0.1236357584 - - protein kinase, putative [Ricinus communis]
18 Hb_000025_340 0.1249084524 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Jatropha curcas]
19 Hb_002585_040 0.1257523249 - - PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]
20 Hb_010997_080 0.1262643778 transcription factor TF Family: mTERF unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_000530_010 Hb_000530_010 Hb_005048_130 Hb_005048_130 Hb_000530_010--Hb_005048_130 Hb_000062_070 Hb_000062_070 Hb_000530_010--Hb_000062_070 Hb_000191_150 Hb_000191_150 Hb_000530_010--Hb_000191_150 Hb_000116_410 Hb_000116_410 Hb_000530_010--Hb_000116_410 Hb_074715_010 Hb_074715_010 Hb_000530_010--Hb_074715_010 Hb_112798_020 Hb_112798_020 Hb_000530_010--Hb_112798_020 Hb_028285_010 Hb_028285_010 Hb_005048_130--Hb_028285_010 Hb_005048_130--Hb_000062_070 Hb_005048_130--Hb_112798_020 Hb_001408_040 Hb_001408_040 Hb_005048_130--Hb_001408_040 Hb_010997_080 Hb_010997_080 Hb_005048_130--Hb_010997_080 Hb_000062_070--Hb_028285_010 Hb_002320_040 Hb_002320_040 Hb_000062_070--Hb_002320_040 Hb_000649_110 Hb_000649_110 Hb_000062_070--Hb_000649_110 Hb_005365_030 Hb_005365_030 Hb_000062_070--Hb_005365_030 Hb_034552_030 Hb_034552_030 Hb_000062_070--Hb_034552_030 Hb_000191_150--Hb_000116_410 Hb_002903_060 Hb_002903_060 Hb_000191_150--Hb_002903_060 Hb_000343_120 Hb_000343_120 Hb_000191_150--Hb_000343_120 Hb_123352_020 Hb_123352_020 Hb_000191_150--Hb_123352_020 Hb_000205_100 Hb_000205_100 Hb_000191_150--Hb_000205_100 Hb_005731_130 Hb_005731_130 Hb_000191_150--Hb_005731_130 Hb_001635_090 Hb_001635_090 Hb_000116_410--Hb_001635_090 Hb_010142_030 Hb_010142_030 Hb_000116_410--Hb_010142_030 Hb_004143_040 Hb_004143_040 Hb_000116_410--Hb_004143_040 Hb_001178_070 Hb_001178_070 Hb_000116_410--Hb_001178_070 Hb_000116_410--Hb_028285_010 Hb_005269_040 Hb_005269_040 Hb_074715_010--Hb_005269_040 Hb_074715_010--Hb_005048_130 Hb_002662_020 Hb_002662_020 Hb_074715_010--Hb_002662_020 Hb_001377_270 Hb_001377_270 Hb_074715_010--Hb_001377_270 Hb_074715_010--Hb_004143_040 Hb_028962_020 Hb_028962_020 Hb_074715_010--Hb_028962_020 Hb_002248_080 Hb_002248_080 Hb_112798_020--Hb_002248_080 Hb_004970_090 Hb_004970_090 Hb_112798_020--Hb_004970_090 Hb_017491_030 Hb_017491_030 Hb_112798_020--Hb_017491_030 Hb_000529_020 Hb_000529_020 Hb_112798_020--Hb_000529_020 Hb_000796_210 Hb_000796_210 Hb_112798_020--Hb_000796_210 Hb_000256_190 Hb_000256_190 Hb_112798_020--Hb_000256_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.64119 17.4355 4.95693 14.809 15.0791 13.5201
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.49676 16.5507 6.08754 14.478 4.13947

CAGE analysis