Hb_000402_210

Information

Type -
Description -
Location Contig402: 192433-200155
Sequence    

Annotation

kegg
ID rcu:RCOM_0024700
description copper amine oxidase, putative
nr
ID KCW86673.1
description hypothetical protein EUGRSUZ_B032971, partial [Eucalyptus grandis]
swissprot
ID Q07123
description Copper methylamine oxidase OS=Arthrobacter sp. (strain P1) GN=maoII PE=1 SV=1
trembl
ID A0A059D855
description Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_B032971 PE=3 SV=1
Gene Ontology
ID GO:0005507
description copper amine oxidase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39936: 193921-194119 , PASA_asmbl_39937: 192529-195099 , PASA_asmbl_39938: 198398-199697 , PASA_asmbl_39939: 199874-200074
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000402_210 0.0 - - hypothetical protein EUGRSUZ_B032971, partial [Eucalyptus grandis]
2 Hb_088753_010 0.0624658735 - - PREDICTED: copper amine oxidase 1-like [Vitis vinifera]
3 Hb_000302_260 0.1100185646 - - hypothetical protein [Bruguiera gymnorhiza]
4 Hb_000451_070 0.1136558651 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
5 Hb_002042_130 0.1311345016 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
6 Hb_007382_120 0.1338819066 - - PREDICTED: delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [Jatropha curcas]
7 Hb_006538_080 0.138283569 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
8 Hb_028487_020 0.1443704586 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]
9 Hb_006788_140 0.1444790481 - - PREDICTED: uncharacterized protein LOC105649915 [Jatropha curcas]
10 Hb_109484_010 0.1475407161 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
11 Hb_189208_020 0.148851406 - - LRX2, putative [Ricinus communis]
12 Hb_002097_200 0.1500042893 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
13 Hb_000948_080 0.1554525879 - - PREDICTED: uncharacterized protein LOC105634692 [Jatropha curcas]
14 Hb_001183_010 0.1556348838 - - -
15 Hb_001268_120 0.1562177459 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004631_210 0.1575600326 - - hypothetical protein POPTR_0007s05070g [Populus trichocarpa]
17 Hb_002236_050 0.1613070065 - - -
18 Hb_011618_060 0.161381703 - - PREDICTED: DNA-repair protein XRCC1 [Jatropha curcas]
19 Hb_005207_050 0.1621823972 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 39 [Jatropha curcas]
20 Hb_001153_180 0.163274766 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]

Gene co-expression network

sample Hb_000402_210 Hb_000402_210 Hb_088753_010 Hb_088753_010 Hb_000402_210--Hb_088753_010 Hb_000302_260 Hb_000302_260 Hb_000402_210--Hb_000302_260 Hb_000451_070 Hb_000451_070 Hb_000402_210--Hb_000451_070 Hb_002042_130 Hb_002042_130 Hb_000402_210--Hb_002042_130 Hb_007382_120 Hb_007382_120 Hb_000402_210--Hb_007382_120 Hb_006538_080 Hb_006538_080 Hb_000402_210--Hb_006538_080 Hb_002097_200 Hb_002097_200 Hb_088753_010--Hb_002097_200 Hb_088753_010--Hb_000451_070 Hb_189208_020 Hb_189208_020 Hb_088753_010--Hb_189208_020 Hb_006788_140 Hb_006788_140 Hb_088753_010--Hb_006788_140 Hb_088753_010--Hb_000302_260 Hb_000302_260--Hb_002042_130 Hb_028487_020 Hb_028487_020 Hb_000302_260--Hb_028487_020 Hb_000302_260--Hb_189208_020 Hb_000086_340 Hb_000086_340 Hb_000302_260--Hb_000086_340 Hb_001894_050 Hb_001894_050 Hb_000451_070--Hb_001894_050 Hb_000451_070--Hb_189208_020 Hb_000451_070--Hb_002042_130 Hb_001153_180 Hb_001153_180 Hb_000451_070--Hb_001153_180 Hb_000538_230 Hb_000538_230 Hb_002042_130--Hb_000538_230 Hb_034688_020 Hb_034688_020 Hb_002042_130--Hb_034688_020 Hb_000649_110 Hb_000649_110 Hb_002042_130--Hb_000649_110 Hb_001159_110 Hb_001159_110 Hb_002042_130--Hb_001159_110 Hb_005074_030 Hb_005074_030 Hb_002042_130--Hb_005074_030 Hb_000120_820 Hb_000120_820 Hb_007382_120--Hb_000120_820 Hb_109484_010 Hb_109484_010 Hb_007382_120--Hb_109484_010 Hb_002007_150 Hb_002007_150 Hb_007382_120--Hb_002007_150 Hb_000008_420 Hb_000008_420 Hb_007382_120--Hb_000008_420 Hb_000490_060 Hb_000490_060 Hb_007382_120--Hb_000490_060 Hb_002915_060 Hb_002915_060 Hb_007382_120--Hb_002915_060 Hb_014068_050 Hb_014068_050 Hb_006538_080--Hb_014068_050 Hb_000225_060 Hb_000225_060 Hb_006538_080--Hb_000225_060 Hb_002301_170 Hb_002301_170 Hb_006538_080--Hb_002301_170 Hb_004631_210 Hb_004631_210 Hb_006538_080--Hb_004631_210 Hb_050847_050 Hb_050847_050 Hb_006538_080--Hb_050847_050 Hb_000111_180 Hb_000111_180 Hb_006538_080--Hb_000111_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.06959 18.6218 5.90641 7.23387 1.91731 4.02471
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.67968 15.9404 3.92566 11.9852 2.95749

CAGE analysis