Hb_000120_820

Information

Type -
Description -
Location Contig120: 652696-655597
Sequence    

Annotation

kegg
ID rcu:RCOM_0873980
description dihydrodipicolinate synthase, putative (EC:4.2.1.52)
nr
ID XP_002521713.1
description dihydrodipicolinate synthase, putative [Ricinus communis]
swissprot
ID Q9FVC8
description 4-hydroxy-tetrahydrodipicolinate synthase 2, chloroplastic OS=Arabidopsis thaliana GN=DHDPS2 PE=1 SV=2
trembl
ID B9S6U4
description Dihydrodipicolinate synthase, putative OS=Ricinus communis GN=RCOM_0873980 PE=4 SV=1
Gene Ontology
ID GO:0008840
description 4-hydroxy-tetrahydrodipicolinate chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06214: 652740-655591
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_820 0.0 - - dihydrodipicolinate synthase, putative [Ricinus communis]
2 Hb_007382_120 0.0714019753 - - PREDICTED: delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [Jatropha curcas]
3 Hb_127743_010 0.0864767592 - - PREDICTED: proteasome activator subunit 4 isoform X2 [Jatropha curcas]
4 Hb_000521_330 0.0882059266 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000920_300 0.088847261 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
6 Hb_000631_120 0.092195855 - - hypothetical protein CISIN_1g0431902mg, partial [Citrus sinensis]
7 Hb_004934_050 0.0941898301 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
8 Hb_000490_060 0.0950582216 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
9 Hb_000008_420 0.0962554665 - - PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]
10 Hb_004781_010 0.0975121318 - - PREDICTED: potassium transporter 11-like [Populus euphratica]
11 Hb_002007_150 0.099644782 - - -
12 Hb_017387_010 0.1006157935 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
13 Hb_143629_100 0.1008361526 - - PREDICTED: phytochrome A [Jatropha curcas]
14 Hb_010775_040 0.1049058738 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
15 Hb_000089_180 0.106160994 - - PREDICTED: homoserine kinase-like [Jatropha curcas]
16 Hb_023771_010 0.1068984781 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
17 Hb_002456_010 0.1070737176 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
18 Hb_001614_060 0.1079248673 - - hypothetical protein JCGZ_06918 [Jatropha curcas]
19 Hb_001157_160 0.1081893408 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 2 isoform X1 [Jatropha curcas]
20 Hb_109484_010 0.1082859312 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]

Gene co-expression network

sample Hb_000120_820 Hb_000120_820 Hb_007382_120 Hb_007382_120 Hb_000120_820--Hb_007382_120 Hb_127743_010 Hb_127743_010 Hb_000120_820--Hb_127743_010 Hb_000521_330 Hb_000521_330 Hb_000120_820--Hb_000521_330 Hb_000920_300 Hb_000920_300 Hb_000120_820--Hb_000920_300 Hb_000631_120 Hb_000631_120 Hb_000120_820--Hb_000631_120 Hb_004934_050 Hb_004934_050 Hb_000120_820--Hb_004934_050 Hb_109484_010 Hb_109484_010 Hb_007382_120--Hb_109484_010 Hb_002007_150 Hb_002007_150 Hb_007382_120--Hb_002007_150 Hb_000008_420 Hb_000008_420 Hb_007382_120--Hb_000008_420 Hb_000490_060 Hb_000490_060 Hb_007382_120--Hb_000490_060 Hb_002915_060 Hb_002915_060 Hb_007382_120--Hb_002915_060 Hb_003913_070 Hb_003913_070 Hb_127743_010--Hb_003913_070 Hb_001417_030 Hb_001417_030 Hb_127743_010--Hb_001417_030 Hb_000111_290 Hb_000111_290 Hb_127743_010--Hb_000111_290 Hb_029243_030 Hb_029243_030 Hb_127743_010--Hb_029243_030 Hb_000340_530 Hb_000340_530 Hb_127743_010--Hb_000340_530 Hb_127743_010--Hb_004934_050 Hb_002492_010 Hb_002492_010 Hb_000521_330--Hb_002492_010 Hb_004143_100 Hb_004143_100 Hb_000521_330--Hb_004143_100 Hb_000189_600 Hb_000189_600 Hb_000521_330--Hb_000189_600 Hb_000089_180 Hb_000089_180 Hb_000521_330--Hb_000089_180 Hb_000029_060 Hb_000029_060 Hb_000521_330--Hb_000029_060 Hb_003906_200 Hb_003906_200 Hb_000521_330--Hb_003906_200 Hb_000920_300--Hb_003913_070 Hb_002456_010 Hb_002456_010 Hb_000920_300--Hb_002456_010 Hb_002641_030 Hb_002641_030 Hb_000920_300--Hb_002641_030 Hb_006520_040 Hb_006520_040 Hb_000920_300--Hb_006520_040 Hb_000920_300--Hb_004934_050 Hb_001671_100 Hb_001671_100 Hb_000920_300--Hb_001671_100 Hb_000940_200 Hb_000940_200 Hb_000631_120--Hb_000940_200 Hb_000862_040 Hb_000862_040 Hb_000631_120--Hb_000862_040 Hb_007054_040 Hb_007054_040 Hb_000631_120--Hb_007054_040 Hb_001935_140 Hb_001935_140 Hb_000631_120--Hb_001935_140 Hb_000363_120 Hb_000363_120 Hb_000631_120--Hb_000363_120 Hb_001862_110 Hb_001862_110 Hb_000631_120--Hb_001862_110 Hb_002477_090 Hb_002477_090 Hb_004934_050--Hb_002477_090 Hb_000340_490 Hb_000340_490 Hb_004934_050--Hb_000340_490 Hb_004934_050--Hb_002456_010 Hb_004208_050 Hb_004208_050 Hb_004934_050--Hb_004208_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.2823 51.9677 21.4302 35.3991 19.2696 19.3504
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.2046 39.3611 19.6368 48.04 32.0135

CAGE analysis