Hb_014068_050

Information

Type -
Description -
Location Contig14068: 33335-36835
Sequence    

Annotation

kegg
ID rcu:RCOM_1440910
description receptor serine-threonine protein kinase, putative (EC:2.7.10.2)
nr
ID XP_012064924.1
description PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
swissprot
ID Q9LQQ8
description Probable serine/threonine-protein kinase RLCKVII OS=Arabidopsis thaliana GN=At1g07870 PE=2 SV=1
trembl
ID Q9MAY5
description Protein kinase 2 OS=Populus nigra GN=PnPK2 PE=2 SV=1
Gene Ontology
ID GO:0004674
description probable serine threonine-protein kinase rlckvii

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11016: 33361-36819 , PASA_asmbl_11017: 34704-34866
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014068_050 0.0 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
2 Hb_006538_080 0.0972264777 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
3 Hb_000111_180 0.1050179178 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
4 Hb_002301_170 0.1127495886 - - MAC/Perforin domain-containing protein [Theobroma cacao]
5 Hb_000512_010 0.1134094211 - - PREDICTED: uncharacterized protein LOC105650728 [Jatropha curcas]
6 Hb_052764_030 0.1165988849 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
7 Hb_000205_240 0.1191863676 - - ubiquitin-protein ligase, putative [Ricinus communis]
8 Hb_000318_480 0.1203686891 - - PREDICTED: RING-H2 finger protein ATL65 [Jatropha curcas]
9 Hb_084490_010 0.1219709321 - - PREDICTED: protein root UVB sensitive 6 isoform X2 [Jatropha curcas]
10 Hb_171900_020 0.1313639316 - - PREDICTED: uncharacterized protein LOC105643207 [Jatropha curcas]
11 Hb_001104_170 0.1338786079 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-2c [Jatropha curcas]
12 Hb_001235_170 0.1357462699 - - PREDICTED: putative glucuronosyltransferase PGSIP8 [Jatropha curcas]
13 Hb_000363_120 0.1367495374 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
14 Hb_010381_030 0.1368226578 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
15 Hb_005146_080 0.1371730353 - - PREDICTED: uncharacterized protein LOC105636704 isoform X2 [Jatropha curcas]
16 Hb_174829_020 0.1378432321 transcription factor TF Family: C2C2-Dof cyclic dof factor 2 [Jatropha curcas]
17 Hb_006788_140 0.1398837433 - - PREDICTED: uncharacterized protein LOC105649915 [Jatropha curcas]
18 Hb_000023_350 0.1428304242 - - PREDICTED: probable folate-biopterin transporter 6 isoform X2 [Populus euphratica]
19 Hb_009486_160 0.1429325957 - - PREDICTED: metacaspase-1 [Jatropha curcas]
20 Hb_002026_060 0.1432945325 - - PREDICTED: uncharacterized protein LOC105645786 [Jatropha curcas]

Gene co-expression network

sample Hb_014068_050 Hb_014068_050 Hb_006538_080 Hb_006538_080 Hb_014068_050--Hb_006538_080 Hb_000111_180 Hb_000111_180 Hb_014068_050--Hb_000111_180 Hb_002301_170 Hb_002301_170 Hb_014068_050--Hb_002301_170 Hb_000512_010 Hb_000512_010 Hb_014068_050--Hb_000512_010 Hb_052764_030 Hb_052764_030 Hb_014068_050--Hb_052764_030 Hb_000205_240 Hb_000205_240 Hb_014068_050--Hb_000205_240 Hb_000225_060 Hb_000225_060 Hb_006538_080--Hb_000225_060 Hb_006538_080--Hb_002301_170 Hb_004631_210 Hb_004631_210 Hb_006538_080--Hb_004631_210 Hb_050847_050 Hb_050847_050 Hb_006538_080--Hb_050847_050 Hb_006538_080--Hb_000111_180 Hb_000002_240 Hb_000002_240 Hb_000111_180--Hb_000002_240 Hb_000318_480 Hb_000318_480 Hb_000111_180--Hb_000318_480 Hb_006588_210 Hb_006588_210 Hb_000111_180--Hb_006588_210 Hb_000260_180 Hb_000260_180 Hb_000111_180--Hb_000260_180 Hb_007441_110 Hb_007441_110 Hb_000111_180--Hb_007441_110 Hb_002301_170--Hb_052764_030 Hb_009486_160 Hb_009486_160 Hb_002301_170--Hb_009486_160 Hb_001439_230 Hb_001439_230 Hb_002301_170--Hb_001439_230 Hb_001862_110 Hb_001862_110 Hb_002301_170--Hb_001862_110 Hb_003711_010 Hb_003711_010 Hb_002301_170--Hb_003711_010 Hb_000363_120 Hb_000363_120 Hb_002301_170--Hb_000363_120 Hb_174829_020 Hb_174829_020 Hb_000512_010--Hb_174829_020 Hb_001104_170 Hb_001104_170 Hb_000512_010--Hb_001104_170 Hb_000019_040 Hb_000019_040 Hb_000512_010--Hb_000019_040 Hb_000512_010--Hb_052764_030 Hb_000291_010 Hb_000291_010 Hb_000512_010--Hb_000291_010 Hb_000866_210 Hb_000866_210 Hb_052764_030--Hb_000866_210 Hb_052764_030--Hb_009486_160 Hb_002897_050 Hb_002897_050 Hb_052764_030--Hb_002897_050 Hb_052764_030--Hb_001104_170 Hb_052764_030--Hb_000291_010 Hb_000205_240--Hb_000363_120 Hb_000802_090 Hb_000802_090 Hb_000205_240--Hb_000802_090 Hb_084490_010 Hb_084490_010 Hb_000205_240--Hb_084490_010 Hb_000649_250 Hb_000649_250 Hb_000205_240--Hb_000649_250 Hb_006738_050 Hb_006738_050 Hb_000205_240--Hb_006738_050 Hb_003398_080 Hb_003398_080 Hb_000205_240--Hb_003398_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1665 43.3985 22.6635 17.3213 11.8177 6.77147
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.34288 19.6934 14.8707 20.7391 4.51795

CAGE analysis