Hb_007441_110

Information

Type -
Description -
Location Contig7441: 62253-65172
Sequence    

Annotation

kegg
ID cit:102621946
description F-box/LRR-repeat protein At3g03030-like
nr
ID XP_012083719.1
description PREDICTED: F-box/LRR-repeat protein At3g58900-like [Jatropha curcas]
swissprot
ID Q9FM89
description F-box/FBD/LRR-repeat protein At5g56420 OS=Arabidopsis thaliana GN=At5g56420 PE=2 SV=1
trembl
ID A0A067K9C0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14646 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box lrr-repeat protein at3g58900-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56603: 63930-64112 , PASA_asmbl_56604: 64229-64421
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007441_110 0.0 - - PREDICTED: F-box/LRR-repeat protein At3g58900-like [Jatropha curcas]
2 Hb_001410_020 0.102669006 - - cdk8, putative [Ricinus communis]
3 Hb_000260_180 0.1067821242 - - PREDICTED: KH domain-containing protein At2g38610 [Jatropha curcas]
4 Hb_006588_210 0.1067856364 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
5 Hb_000130_240 0.1067923336 - - hypothetical protein RCOM_1520720 [Ricinus communis]
6 Hb_021576_110 0.1073404632 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 [Jatropha curcas]
7 Hb_000087_060 0.1100031423 - - protein transporter, putative [Ricinus communis]
8 Hb_000915_060 0.1105723949 - - PREDICTED: uncharacterized protein LOC105628864 [Jatropha curcas]
9 Hb_000111_180 0.1106001864 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
10 Hb_003927_040 0.1123203837 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
11 Hb_004880_140 0.11301876 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 1 [Jatropha curcas]
12 Hb_003581_250 0.1151164721 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
13 Hb_002876_130 0.1158271482 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
14 Hb_153553_030 0.1160006614 - - PREDICTED: zinc finger protein GIS2 [Jatropha curcas]
15 Hb_004870_050 0.1163291862 - - PREDICTED: ATP-dependent RNA helicase DBP3 [Jatropha curcas]
16 Hb_002056_090 0.1165892084 transcription factor TF Family: GNAT PREDICTED: probable acetyltransferase NATA1-like [Jatropha curcas]
17 Hb_000454_130 0.1167129939 transcription factor TF Family: BBR-BPC conserved hypothetical protein [Ricinus communis]
18 Hb_009767_070 0.119211172 - - PREDICTED: uncharacterized protein LOC105631980 [Jatropha curcas]
19 Hb_000905_210 0.1221634216 - - PREDICTED: protein gar2 [Jatropha curcas]
20 Hb_012779_090 0.1223305207 - - PREDICTED: lipase member N [Jatropha curcas]

Gene co-expression network

sample Hb_007441_110 Hb_007441_110 Hb_001410_020 Hb_001410_020 Hb_007441_110--Hb_001410_020 Hb_000260_180 Hb_000260_180 Hb_007441_110--Hb_000260_180 Hb_006588_210 Hb_006588_210 Hb_007441_110--Hb_006588_210 Hb_000130_240 Hb_000130_240 Hb_007441_110--Hb_000130_240 Hb_021576_110 Hb_021576_110 Hb_007441_110--Hb_021576_110 Hb_000087_060 Hb_000087_060 Hb_007441_110--Hb_000087_060 Hb_001410_020--Hb_000260_180 Hb_162275_050 Hb_162275_050 Hb_001410_020--Hb_162275_050 Hb_012779_090 Hb_012779_090 Hb_001410_020--Hb_012779_090 Hb_000373_230 Hb_000373_230 Hb_001410_020--Hb_000373_230 Hb_001410_020--Hb_006588_210 Hb_000025_730 Hb_000025_730 Hb_001410_020--Hb_000025_730 Hb_000260_180--Hb_006588_210 Hb_000260_180--Hb_012779_090 Hb_000260_180--Hb_162275_050 Hb_005541_010 Hb_005541_010 Hb_000260_180--Hb_005541_010 Hb_000260_180--Hb_000025_730 Hb_000340_400 Hb_000340_400 Hb_006588_210--Hb_000340_400 Hb_004870_050 Hb_004870_050 Hb_006588_210--Hb_004870_050 Hb_006588_210--Hb_000087_060 Hb_002073_200 Hb_002073_200 Hb_006588_210--Hb_002073_200 Hb_111198_010 Hb_111198_010 Hb_000130_240--Hb_111198_010 Hb_001247_130 Hb_001247_130 Hb_000130_240--Hb_001247_130 Hb_000307_190 Hb_000307_190 Hb_000130_240--Hb_000307_190 Hb_005137_050 Hb_005137_050 Hb_000130_240--Hb_005137_050 Hb_002411_030 Hb_002411_030 Hb_000130_240--Hb_002411_030 Hb_032208_040 Hb_032208_040 Hb_000130_240--Hb_032208_040 Hb_000331_670 Hb_000331_670 Hb_021576_110--Hb_000331_670 Hb_000868_110 Hb_000868_110 Hb_021576_110--Hb_000868_110 Hb_140506_010 Hb_140506_010 Hb_021576_110--Hb_140506_010 Hb_001818_070 Hb_001818_070 Hb_021576_110--Hb_001818_070 Hb_001157_040 Hb_001157_040 Hb_021576_110--Hb_001157_040 Hb_001838_060 Hb_001838_060 Hb_021576_110--Hb_001838_060 Hb_001205_200 Hb_001205_200 Hb_000087_060--Hb_001205_200 Hb_002492_010 Hb_002492_010 Hb_000087_060--Hb_002492_010 Hb_001089_050 Hb_001089_050 Hb_000087_060--Hb_001089_050 Hb_000358_230 Hb_000358_230 Hb_000087_060--Hb_000358_230 Hb_000076_160 Hb_000076_160 Hb_000087_060--Hb_000076_160 Hb_000454_130 Hb_000454_130 Hb_000087_060--Hb_000454_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.61043 8.16319 6.27722 3.27694 5.05817 5.53059
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.24227 6.74586 3.61036 3.82529 2.34113

CAGE analysis