Hb_000318_480

Information

Type -
Description -
Location Contig318: 473089-474342
Sequence    

Annotation

kegg
ID pop:POPTR_0009s11310g
description POPTRDRAFT_557309; hypothetical protein
nr
ID XP_012069326.1
description PREDICTED: RING-H2 finger protein ATL65 [Jatropha curcas]
swissprot
ID Q67YI6
description RING-H2 finger protein ATL65 OS=Arabidopsis thaliana GN=ATL65 PE=2 SV=2
trembl
ID A0A067LG04
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10038 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl65

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33570: 473234-473865
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000318_480 0.0 - - PREDICTED: RING-H2 finger protein ATL65 [Jatropha curcas]
2 Hb_000111_180 0.0947739233 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
3 Hb_014068_050 0.1203686891 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
4 Hb_002301_170 0.1248313787 - - MAC/Perforin domain-containing protein [Theobroma cacao]
5 Hb_052764_030 0.1289625803 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
6 Hb_009486_160 0.133001104 - - PREDICTED: metacaspase-1 [Jatropha curcas]
7 Hb_000215_350 0.1330912096 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
8 Hb_005496_180 0.1361984737 - - PREDICTED: U-box domain-containing protein 4-like [Jatropha curcas]
9 Hb_004774_020 0.1388087122 - - PREDICTED: PRA1 family protein B4-like [Camelina sativa]
10 Hb_000120_030 0.1395264303 - - PREDICTED: uncharacterized protein LOC105630385 isoform X1 [Jatropha curcas]
11 Hb_001439_230 0.1413766434 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
12 Hb_000373_230 0.1431705108 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
13 Hb_007441_110 0.1434331077 - - PREDICTED: F-box/LRR-repeat protein At3g58900-like [Jatropha curcas]
14 Hb_084490_010 0.1444908649 - - PREDICTED: protein root UVB sensitive 6 isoform X2 [Jatropha curcas]
15 Hb_000905_210 0.145006699 - - PREDICTED: protein gar2 [Jatropha curcas]
16 Hb_000291_010 0.146086935 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
17 Hb_002812_010 0.146196211 - - PREDICTED: chitin elicitor receptor kinase 1 isoform X1 [Jatropha curcas]
18 Hb_000205_240 0.1462821856 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_002897_050 0.1467133361 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
20 Hb_000363_120 0.1472854575 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]

Gene co-expression network

sample Hb_000318_480 Hb_000318_480 Hb_000111_180 Hb_000111_180 Hb_000318_480--Hb_000111_180 Hb_014068_050 Hb_014068_050 Hb_000318_480--Hb_014068_050 Hb_002301_170 Hb_002301_170 Hb_000318_480--Hb_002301_170 Hb_052764_030 Hb_052764_030 Hb_000318_480--Hb_052764_030 Hb_009486_160 Hb_009486_160 Hb_000318_480--Hb_009486_160 Hb_000215_350 Hb_000215_350 Hb_000318_480--Hb_000215_350 Hb_000002_240 Hb_000002_240 Hb_000111_180--Hb_000002_240 Hb_006588_210 Hb_006588_210 Hb_000111_180--Hb_006588_210 Hb_000111_180--Hb_014068_050 Hb_000260_180 Hb_000260_180 Hb_000111_180--Hb_000260_180 Hb_007441_110 Hb_007441_110 Hb_000111_180--Hb_007441_110 Hb_006538_080 Hb_006538_080 Hb_014068_050--Hb_006538_080 Hb_014068_050--Hb_002301_170 Hb_000512_010 Hb_000512_010 Hb_014068_050--Hb_000512_010 Hb_014068_050--Hb_052764_030 Hb_000205_240 Hb_000205_240 Hb_014068_050--Hb_000205_240 Hb_002301_170--Hb_052764_030 Hb_002301_170--Hb_009486_160 Hb_001439_230 Hb_001439_230 Hb_002301_170--Hb_001439_230 Hb_001862_110 Hb_001862_110 Hb_002301_170--Hb_001862_110 Hb_003711_010 Hb_003711_010 Hb_002301_170--Hb_003711_010 Hb_000363_120 Hb_000363_120 Hb_002301_170--Hb_000363_120 Hb_000866_210 Hb_000866_210 Hb_052764_030--Hb_000866_210 Hb_052764_030--Hb_009486_160 Hb_002897_050 Hb_002897_050 Hb_052764_030--Hb_002897_050 Hb_001104_170 Hb_001104_170 Hb_052764_030--Hb_001104_170 Hb_000291_010 Hb_000291_010 Hb_052764_030--Hb_000291_010 Hb_011249_060 Hb_011249_060 Hb_009486_160--Hb_011249_060 Hb_002812_010 Hb_002812_010 Hb_009486_160--Hb_002812_010 Hb_009486_160--Hb_001862_110 Hb_004319_070 Hb_004319_070 Hb_009486_160--Hb_004319_070 Hb_009486_160--Hb_000363_120 Hb_004899_040 Hb_004899_040 Hb_009486_160--Hb_004899_040 Hb_002572_050 Hb_002572_050 Hb_000215_350--Hb_002572_050 Hb_005496_180 Hb_005496_180 Hb_000215_350--Hb_005496_180 Hb_003411_030 Hb_003411_030 Hb_000215_350--Hb_003411_030 Hb_000953_050 Hb_000953_050 Hb_000215_350--Hb_000953_050 Hb_000056_170 Hb_000056_170 Hb_000215_350--Hb_000056_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.581159 5.32316 2.64934 1.48148 1.52467 1.17438
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.577464 2.51355 1.52441 1.78189 1.06801

CAGE analysis