Hb_002572_050

Information

Type transcription factor
Description TF Family: PLATZ
Location Contig2572: 40175-42450
Sequence    

Annotation

kegg
ID rcu:RCOM_1602480
description protein with unknown function
nr
ID XP_002510750.1
description protein with unknown function [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R8V7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1602480 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26770: 40189-42425
cDNA
(Sanger)
(ID:Location)		 034_H14.ab1: 40189-41801

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002572_050 0.0 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
2 Hb_000953_050 0.1089363508 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
3 Hb_005496_180 0.1158996767 - - PREDICTED: U-box domain-containing protein 4-like [Jatropha curcas]
4 Hb_001369_570 0.1180488646 - - hypothetical protein JCGZ_26236 [Jatropha curcas]
5 Hb_001794_060 0.1182148031 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000215_350 0.1182287311 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
7 Hb_008511_100 0.1311906887 - - hypothetical protein POPTR_0009s11860g [Populus trichocarpa]
8 Hb_002097_200 0.1323015238 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
9 Hb_002639_100 0.1357312207 - - dehydrin [Hevea brasiliensis]
10 Hb_088753_010 0.1379514287 - - PREDICTED: copper amine oxidase 1-like [Vitis vinifera]
11 Hb_000056_170 0.1422522593 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000976_290 0.1503173396 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105646228 [Jatropha curcas]
13 Hb_002701_220 0.1509648008 - - PREDICTED: solute carrier family 25 member 44 [Jatropha curcas]
14 Hb_126380_010 0.1515988071 desease resistance Gene Name: NB-ARC ATP binding protein, putative [Ricinus communis]
15 Hb_012107_010 0.1524166836 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
16 Hb_000634_070 0.152484826 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
17 Hb_003605_240 0.1540185026 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
18 Hb_002053_130 0.155450823 - - UDP-glucose 4-epimerase, putative [Ricinus communis]
19 Hb_003411_030 0.156998963 - - hypothetical protein POPTR_0010s13590g [Populus trichocarpa]
20 Hb_001944_020 0.1598765089 - - PREDICTED: uncharacterized protein LOC105636535 [Jatropha curcas]

Gene co-expression network

sample Hb_002572_050 Hb_002572_050 Hb_000953_050 Hb_000953_050 Hb_002572_050--Hb_000953_050 Hb_005496_180 Hb_005496_180 Hb_002572_050--Hb_005496_180 Hb_001369_570 Hb_001369_570 Hb_002572_050--Hb_001369_570 Hb_001794_060 Hb_001794_060 Hb_002572_050--Hb_001794_060 Hb_000215_350 Hb_000215_350 Hb_002572_050--Hb_000215_350 Hb_008511_100 Hb_008511_100 Hb_002572_050--Hb_008511_100 Hb_028207_040 Hb_028207_040 Hb_000953_050--Hb_028207_040 Hb_000953_050--Hb_005496_180 Hb_003055_140 Hb_003055_140 Hb_000953_050--Hb_003055_140 Hb_009028_010 Hb_009028_010 Hb_000953_050--Hb_009028_010 Hb_001629_060 Hb_001629_060 Hb_000953_050--Hb_001629_060 Hb_000805_230 Hb_000805_230 Hb_005496_180--Hb_000805_230 Hb_000120_160 Hb_000120_160 Hb_005496_180--Hb_000120_160 Hb_002053_130 Hb_002053_130 Hb_005496_180--Hb_002053_130 Hb_002915_070 Hb_002915_070 Hb_005496_180--Hb_002915_070 Hb_001369_570--Hb_000953_050 Hb_001369_570--Hb_028207_040 Hb_001369_570--Hb_005496_180 Hb_001369_570--Hb_001794_060 Hb_001525_010 Hb_001525_010 Hb_001369_570--Hb_001525_010 Hb_126380_010 Hb_126380_010 Hb_001794_060--Hb_126380_010 Hb_001794_060--Hb_008511_100 Hb_001944_020 Hb_001944_020 Hb_001794_060--Hb_001944_020 Hb_001433_140 Hb_001433_140 Hb_001794_060--Hb_001433_140 Hb_000318_480 Hb_000318_480 Hb_000215_350--Hb_000318_480 Hb_000215_350--Hb_005496_180 Hb_003411_030 Hb_003411_030 Hb_000215_350--Hb_003411_030 Hb_000215_350--Hb_000953_050 Hb_000056_170 Hb_000056_170 Hb_000215_350--Hb_000056_170 Hb_002097_200 Hb_002097_200 Hb_008511_100--Hb_002097_200 Hb_008511_100--Hb_000953_050 Hb_001288_070 Hb_001288_070 Hb_008511_100--Hb_001288_070 Hb_008511_100--Hb_005496_180 Hb_189208_020 Hb_189208_020 Hb_008511_100--Hb_189208_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.297 124.361 20.1293 26.3388 11.6332 17.2109
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.0412 49.2422 20.2307 24.6313 21.8322

CAGE analysis