Hb_001433_140

Information

Type -
Description -
Location Contig1433: 142228-149198
Sequence    

Annotation

kegg
ID rcu:RCOM_1434140
description phospholipase d zeta, putative (EC:3.1.4.4 1.3.1.74)
nr
ID XP_012088961.1
description PREDICTED: phospholipase D p1 [Jatropha curcas]
swissprot
ID Q9LRZ5
description Phospholipase D p1 OS=Arabidopsis thaliana GN=PLDP1 PE=1 SV=1
trembl
ID B9RFF1
description Phospholipase d zeta, putative OS=Ricinus communis GN=RCOM_1434140 PE=4 SV=1
Gene Ontology
ID GO:0005773
description phospholipase d p1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11409: 148111-148669
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001433_140 0.0 - - PREDICTED: phospholipase D p1 [Jatropha curcas]
2 Hb_001794_060 0.1473145364 - - conserved hypothetical protein [Ricinus communis]
3 Hb_008511_100 0.1592363723 - - hypothetical protein POPTR_0009s11860g [Populus trichocarpa]
4 Hb_002639_100 0.1654251144 - - dehydrin [Hevea brasiliensis]
5 Hb_008066_070 0.1695725554 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
6 Hb_003747_210 0.1718690163 - - PREDICTED: uncharacterized protein LOC105630240 [Jatropha curcas]
7 Hb_002097_200 0.1735597455 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
8 Hb_002572_050 0.1771647646 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
9 Hb_001411_140 0.1774739487 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
10 Hb_007576_200 0.1778436657 - - amino acid transporter, putative [Ricinus communis]
11 Hb_000649_240 0.1779900173 - - PREDICTED: probable peroxygenase 4 [Jatropha curcas]
12 Hb_000429_180 0.1801544457 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
13 Hb_006441_020 0.1801967356 - - PREDICTED: cadmium/zinc-transporting ATPase HMA3-like isoform X2 [Populus euphratica]
14 Hb_117895_010 0.1834478474 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
15 Hb_006788_140 0.1837731039 - - PREDICTED: uncharacterized protein LOC105649915 [Jatropha curcas]
16 Hb_000426_030 0.1849547012 - - PREDICTED: protein STICHEL-like 3 isoform X2 [Jatropha curcas]
17 Hb_000002_270 0.1890897974 - - hypothetical protein VITISV_043897 [Vitis vinifera]
18 Hb_012107_010 0.1895424244 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
19 Hb_008173_030 0.1905049736 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
20 Hb_088753_010 0.1933212158 - - PREDICTED: copper amine oxidase 1-like [Vitis vinifera]

Gene co-expression network

sample Hb_001433_140 Hb_001433_140 Hb_001794_060 Hb_001794_060 Hb_001433_140--Hb_001794_060 Hb_008511_100 Hb_008511_100 Hb_001433_140--Hb_008511_100 Hb_002639_100 Hb_002639_100 Hb_001433_140--Hb_002639_100 Hb_008066_070 Hb_008066_070 Hb_001433_140--Hb_008066_070 Hb_003747_210 Hb_003747_210 Hb_001433_140--Hb_003747_210 Hb_002097_200 Hb_002097_200 Hb_001433_140--Hb_002097_200 Hb_002572_050 Hb_002572_050 Hb_001794_060--Hb_002572_050 Hb_126380_010 Hb_126380_010 Hb_001794_060--Hb_126380_010 Hb_001369_570 Hb_001369_570 Hb_001794_060--Hb_001369_570 Hb_001794_060--Hb_008511_100 Hb_001944_020 Hb_001944_020 Hb_001794_060--Hb_001944_020 Hb_008511_100--Hb_002097_200 Hb_000953_050 Hb_000953_050 Hb_008511_100--Hb_000953_050 Hb_001288_070 Hb_001288_070 Hb_008511_100--Hb_001288_070 Hb_008511_100--Hb_002572_050 Hb_005496_180 Hb_005496_180 Hb_008511_100--Hb_005496_180 Hb_189208_020 Hb_189208_020 Hb_008511_100--Hb_189208_020 Hb_006935_010 Hb_006935_010 Hb_002639_100--Hb_006935_010 Hb_002053_130 Hb_002053_130 Hb_002639_100--Hb_002053_130 Hb_012107_010 Hb_012107_010 Hb_002639_100--Hb_012107_010 Hb_002639_100--Hb_002572_050 Hb_000038_040 Hb_000038_040 Hb_002639_100--Hb_000038_040 Hb_002639_100--Hb_003747_210 Hb_020805_170 Hb_020805_170 Hb_008066_070--Hb_020805_170 Hb_011512_130 Hb_011512_130 Hb_008066_070--Hb_011512_130 Hb_000140_410 Hb_000140_410 Hb_008066_070--Hb_000140_410 Hb_000905_170 Hb_000905_170 Hb_008066_070--Hb_000905_170 Hb_007676_020 Hb_007676_020 Hb_008066_070--Hb_007676_020 Hb_000856_180 Hb_000856_180 Hb_008066_070--Hb_000856_180 Hb_000110_300 Hb_000110_300 Hb_003747_210--Hb_000110_300 Hb_002217_090 Hb_002217_090 Hb_003747_210--Hb_002217_090 Hb_002915_060 Hb_002915_060 Hb_003747_210--Hb_002915_060 Hb_010661_010 Hb_010661_010 Hb_003747_210--Hb_010661_010 Hb_004128_030 Hb_004128_030 Hb_003747_210--Hb_004128_030 Hb_007576_200 Hb_007576_200 Hb_003747_210--Hb_007576_200 Hb_002097_200--Hb_189208_020 Hb_088753_010 Hb_088753_010 Hb_002097_200--Hb_088753_010 Hb_000987_060 Hb_000987_060 Hb_002097_200--Hb_000987_060 Hb_010381_030 Hb_010381_030 Hb_002097_200--Hb_010381_030 Hb_003752_100 Hb_003752_100 Hb_002097_200--Hb_003752_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.411798 2.18084 0.0882689 1.00679 0.159016 0.327821
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.313805 0.740838 0.473124 0.856556 0.285881

CAGE analysis