Hb_000987_060

Information

Type -
Description -
Location Contig987: 56644-60246
Sequence    

Annotation

kegg
ID rcu:RCOM_0848310
description hypothetical protein
nr
ID XP_012089773.1
description PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JG62
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00414 PE=4 SV=1
Gene Ontology
ID GO:0005634
description brca1-a complex subunit abraxas

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64662: 56661-60018
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000987_060 0.0 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
2 Hb_001856_200 0.1016307886 - - Esterase PIR7B, putative [Ricinus communis]
3 Hb_000732_250 0.1127384473 - - PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial-like [Populus euphratica]
4 Hb_006788_140 0.1128117797 - - PREDICTED: uncharacterized protein LOC105649915 [Jatropha curcas]
5 Hb_007943_050 0.1159372475 - - peroxiredoxin, putative [Ricinus communis]
6 Hb_006909_060 0.1160427694 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Solanum lycopersicum]
7 Hb_002097_200 0.1167321703 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
8 Hb_001825_060 0.1197362466 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
9 Hb_003752_100 0.1215619101 - - PREDICTED: FRIGIDA-like protein 3 [Jatropha curcas]
10 Hb_000363_210 0.1222418721 - - PREDICTED: putative MO25-like protein At5g47540 [Jatropha curcas]
11 Hb_084490_010 0.1244479659 - - PREDICTED: protein root UVB sensitive 6 isoform X2 [Jatropha curcas]
12 Hb_000210_010 0.1259882304 - - PREDICTED: probable CCR4-associated factor 1 homolog 11 [Jatropha curcas]
13 Hb_000430_020 0.1269745347 - - -
14 Hb_004724_210 0.1277608654 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005074_030 0.1284315957 - - -
16 Hb_005306_190 0.1311777604 - - Mitochondrial import inner membrane translocase subunit tim23, putative [Ricinus communis]
17 Hb_034688_020 0.1343975277 - - PREDICTED: uncharacterized protein LOC105642050 [Jatropha curcas]
18 Hb_003175_030 0.1347319529 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
19 Hb_012573_040 0.1364897658 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
20 Hb_000538_230 0.1379636512 - - PREDICTED: auxin response factor 8 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000987_060 Hb_000987_060 Hb_001856_200 Hb_001856_200 Hb_000987_060--Hb_001856_200 Hb_000732_250 Hb_000732_250 Hb_000987_060--Hb_000732_250 Hb_006788_140 Hb_006788_140 Hb_000987_060--Hb_006788_140 Hb_007943_050 Hb_007943_050 Hb_000987_060--Hb_007943_050 Hb_006909_060 Hb_006909_060 Hb_000987_060--Hb_006909_060 Hb_002097_200 Hb_002097_200 Hb_000987_060--Hb_002097_200 Hb_002217_020 Hb_002217_020 Hb_001856_200--Hb_002217_020 Hb_001825_060 Hb_001825_060 Hb_001856_200--Hb_001825_060 Hb_000210_010 Hb_000210_010 Hb_001856_200--Hb_000210_010 Hb_141990_040 Hb_141990_040 Hb_001856_200--Hb_141990_040 Hb_000009_450 Hb_000009_450 Hb_001856_200--Hb_000009_450 Hb_000345_200 Hb_000345_200 Hb_000732_250--Hb_000345_200 Hb_034688_020 Hb_034688_020 Hb_000732_250--Hb_034688_020 Hb_001189_140 Hb_001189_140 Hb_000732_250--Hb_001189_140 Hb_000732_250--Hb_001825_060 Hb_000732_250--Hb_001856_200 Hb_000019_040 Hb_000019_040 Hb_006788_140--Hb_000019_040 Hb_189208_020 Hb_189208_020 Hb_006788_140--Hb_189208_020 Hb_003175_030 Hb_003175_030 Hb_006788_140--Hb_003175_030 Hb_000976_280 Hb_000976_280 Hb_006788_140--Hb_000976_280 Hb_006788_140--Hb_002097_200 Hb_000045_300 Hb_000045_300 Hb_007943_050--Hb_000045_300 Hb_009545_090 Hb_009545_090 Hb_007943_050--Hb_009545_090 Hb_005306_190 Hb_005306_190 Hb_007943_050--Hb_005306_190 Hb_007943_050--Hb_000210_010 Hb_095296_010 Hb_095296_010 Hb_007943_050--Hb_095296_010 Hb_010519_040 Hb_010519_040 Hb_007943_050--Hb_010519_040 Hb_006909_060--Hb_000210_010 Hb_000056_170 Hb_000056_170 Hb_006909_060--Hb_000056_170 Hb_171900_020 Hb_171900_020 Hb_006909_060--Hb_171900_020 Hb_002701_220 Hb_002701_220 Hb_006909_060--Hb_002701_220 Hb_001944_020 Hb_001944_020 Hb_006909_060--Hb_001944_020 Hb_002097_200--Hb_189208_020 Hb_088753_010 Hb_088753_010 Hb_002097_200--Hb_088753_010 Hb_010381_030 Hb_010381_030 Hb_002097_200--Hb_010381_030 Hb_008511_100 Hb_008511_100 Hb_002097_200--Hb_008511_100 Hb_003752_100 Hb_003752_100 Hb_002097_200--Hb_003752_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.7746 73.9763 24.0518 34.6926 17.8785 13.9876
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.9579 40.2553 46.9864 21.1862 10.2208

CAGE analysis