Hb_002701_220

Information

Type -
Description -
Location Contig2701: 203289-207526
Sequence    

Annotation

kegg
ID rcu:RCOM_0917530
description Mitochondrial carnitine/acylcarnitine carrier protein, putative
nr
ID XP_012088051.1
description PREDICTED: solute carrier family 25 member 44 [Jatropha curcas]
swissprot
ID Q8BGF9
description Solute carrier family 25 member 44 OS=Mus musculus GN=Slc25a44 PE=2 SV=1
trembl
ID A0A067JWB8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25581 PE=3 SV=1
Gene Ontology
ID GO:0005739
description solute carrier family 25 member 44

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28343: 203412-207433
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002701_220 0.0 - - PREDICTED: solute carrier family 25 member 44 [Jatropha curcas]
2 Hb_001944_020 0.1085292858 - - PREDICTED: uncharacterized protein LOC105636535 [Jatropha curcas]
3 Hb_003605_240 0.1185197491 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
4 Hb_000210_010 0.1253447632 - - PREDICTED: probable CCR4-associated factor 1 homolog 11 [Jatropha curcas]
5 Hb_012573_040 0.1258625665 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
6 Hb_006909_060 0.1309369333 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Solanum lycopersicum]
7 Hb_001648_030 0.1325354552 - - PREDICTED: uncharacterized protein LOC105628931 isoform X2 [Jatropha curcas]
8 Hb_004724_210 0.1326510358 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000398_100 0.1351658268 - - Uncharacterized protein isoform 2 [Theobroma cacao]
10 Hb_004774_020 0.1352553273 - - PREDICTED: PRA1 family protein B4-like [Camelina sativa]
11 Hb_001825_060 0.1353025045 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
12 Hb_088753_010 0.1370507744 - - PREDICTED: copper amine oxidase 1-like [Vitis vinifera]
13 Hb_006788_140 0.1372191558 - - PREDICTED: uncharacterized protein LOC105649915 [Jatropha curcas]
14 Hb_002042_170 0.139444776 - - RING/U-box superfamily protein [Theobroma cacao]
15 Hb_000465_300 0.1400442717 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
16 Hb_000152_330 0.1404057162 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
17 Hb_000987_060 0.1428597686 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
18 Hb_000173_470 0.1443108091 - - PREDICTED: BSD domain-containing protein 1 [Jatropha curcas]
19 Hb_001153_180 0.1450235064 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
20 Hb_002097_200 0.1499875838 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_002701_220 Hb_002701_220 Hb_001944_020 Hb_001944_020 Hb_002701_220--Hb_001944_020 Hb_003605_240 Hb_003605_240 Hb_002701_220--Hb_003605_240 Hb_000210_010 Hb_000210_010 Hb_002701_220--Hb_000210_010 Hb_012573_040 Hb_012573_040 Hb_002701_220--Hb_012573_040 Hb_006909_060 Hb_006909_060 Hb_002701_220--Hb_006909_060 Hb_001648_030 Hb_001648_030 Hb_002701_220--Hb_001648_030 Hb_002217_090 Hb_002217_090 Hb_001944_020--Hb_002217_090 Hb_012107_010 Hb_012107_010 Hb_001944_020--Hb_012107_010 Hb_002053_130 Hb_002053_130 Hb_001944_020--Hb_002053_130 Hb_003747_210 Hb_003747_210 Hb_001944_020--Hb_003747_210 Hb_001500_030 Hb_001500_030 Hb_001944_020--Hb_001500_030 Hb_000976_280 Hb_000976_280 Hb_003605_240--Hb_000976_280 Hb_001123_200 Hb_001123_200 Hb_003605_240--Hb_001123_200 Hb_000364_040 Hb_000364_040 Hb_003605_240--Hb_000364_040 Hb_003605_240--Hb_006909_060 Hb_005496_180 Hb_005496_180 Hb_003605_240--Hb_005496_180 Hb_007943_050 Hb_007943_050 Hb_000210_010--Hb_007943_050 Hb_000649_130 Hb_000649_130 Hb_000210_010--Hb_000649_130 Hb_000210_010--Hb_006909_060 Hb_001856_200 Hb_001856_200 Hb_000210_010--Hb_001856_200 Hb_000342_060 Hb_000342_060 Hb_000210_010--Hb_000342_060 Hb_000164_020 Hb_000164_020 Hb_000210_010--Hb_000164_020 Hb_000398_100 Hb_000398_100 Hb_012573_040--Hb_000398_100 Hb_000173_470 Hb_000173_470 Hb_012573_040--Hb_000173_470 Hb_000951_130 Hb_000951_130 Hb_012573_040--Hb_000951_130 Hb_001825_060 Hb_001825_060 Hb_012573_040--Hb_001825_060 Hb_000270_120 Hb_000270_120 Hb_012573_040--Hb_000270_120 Hb_004916_010 Hb_004916_010 Hb_012573_040--Hb_004916_010 Hb_000987_060 Hb_000987_060 Hb_006909_060--Hb_000987_060 Hb_000056_170 Hb_000056_170 Hb_006909_060--Hb_000056_170 Hb_171900_020 Hb_171900_020 Hb_006909_060--Hb_171900_020 Hb_006909_060--Hb_001944_020 Hb_001648_030--Hb_000398_100 Hb_163256_020 Hb_163256_020 Hb_001648_030--Hb_163256_020 Hb_000448_050 Hb_000448_050 Hb_001648_030--Hb_000448_050 Hb_005162_060 Hb_005162_060 Hb_001648_030--Hb_005162_060 Hb_022318_020 Hb_022318_020 Hb_001648_030--Hb_022318_020 Hb_002534_100 Hb_002534_100 Hb_001648_030--Hb_002534_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.07727 21.7526 7.72521 9.37132 2.43091 2.40871
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.50029 15.3514 8.81626 6.23002 6.73598

CAGE analysis