Hb_003605_240

Information

Type transcription factor
Description TF Family: WRKY
Location Contig3605: 240652-243299
Sequence    

Annotation

kegg
ID tcc:TCM_042240
description WRKY DNA-binding protein 33 isoform 1
nr
ID XP_012080808.1
description PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
swissprot
ID Q8S8P5
description Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2
trembl
ID M9TGB8
description Uncharacterized protein OS=Jatropha curcas GN=WRKY07 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 33

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37155: 241056-241828
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003605_240 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
2 Hb_002701_220 0.1185197491 - - PREDICTED: solute carrier family 25 member 44 [Jatropha curcas]
3 Hb_000976_280 0.1271289244 - - PREDICTED: uncharacterized serine-rich protein C215.13-like [Jatropha curcas]
4 Hb_001123_200 0.1363321663 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000364_040 0.1383650475 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF010-like [Jatropha curcas]
6 Hb_006909_060 0.1404353504 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Solanum lycopersicum]
7 Hb_005496_180 0.1448001263 - - PREDICTED: U-box domain-containing protein 4-like [Jatropha curcas]
8 Hb_002042_170 0.1451190056 - - RING/U-box superfamily protein [Theobroma cacao]
9 Hb_003055_140 0.1456599908 transcription factor TF Family: SNF2 PREDICTED: uncharacterized protein LOC105649495 [Jatropha curcas]
10 Hb_012573_040 0.1476827476 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
11 Hb_000634_070 0.1510638409 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
12 Hb_001944_020 0.1518600545 - - PREDICTED: uncharacterized protein LOC105636535 [Jatropha curcas]
13 Hb_004774_020 0.1530194368 - - PREDICTED: PRA1 family protein B4-like [Camelina sativa]
14 Hb_000809_090 0.1539406607 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA isoform X1 [Jatropha curcas]
15 Hb_002572_050 0.1540185026 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
16 Hb_000538_030 0.1553132661 - - glutathione s-transferase, putative [Ricinus communis]
17 Hb_000953_050 0.1564078263 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
18 Hb_000019_040 0.1583071014 - - PREDICTED: mitochondrial phosphate carrier protein 3, mitochondrial [Jatropha curcas]
19 Hb_000256_130 0.1591137642 - - hypothetical protein 21 [Hevea brasiliensis]
20 Hb_000987_060 0.1597247749 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]

Gene co-expression network

sample Hb_003605_240 Hb_003605_240 Hb_002701_220 Hb_002701_220 Hb_003605_240--Hb_002701_220 Hb_000976_280 Hb_000976_280 Hb_003605_240--Hb_000976_280 Hb_001123_200 Hb_001123_200 Hb_003605_240--Hb_001123_200 Hb_000364_040 Hb_000364_040 Hb_003605_240--Hb_000364_040 Hb_006909_060 Hb_006909_060 Hb_003605_240--Hb_006909_060 Hb_005496_180 Hb_005496_180 Hb_003605_240--Hb_005496_180 Hb_001944_020 Hb_001944_020 Hb_002701_220--Hb_001944_020 Hb_000210_010 Hb_000210_010 Hb_002701_220--Hb_000210_010 Hb_012573_040 Hb_012573_040 Hb_002701_220--Hb_012573_040 Hb_002701_220--Hb_006909_060 Hb_001648_030 Hb_001648_030 Hb_002701_220--Hb_001648_030 Hb_000019_040 Hb_000019_040 Hb_000976_280--Hb_000019_040 Hb_001484_020 Hb_001484_020 Hb_000976_280--Hb_001484_020 Hb_006788_140 Hb_006788_140 Hb_000976_280--Hb_006788_140 Hb_013241_010 Hb_013241_010 Hb_000976_280--Hb_013241_010 Hb_000077_390 Hb_000077_390 Hb_000976_280--Hb_000077_390 Hb_001377_360 Hb_001377_360 Hb_001123_200--Hb_001377_360 Hb_000179_240 Hb_000179_240 Hb_001123_200--Hb_000179_240 Hb_001123_200--Hb_000976_280 Hb_002685_200 Hb_002685_200 Hb_001123_200--Hb_002685_200 Hb_004324_300 Hb_004324_300 Hb_001123_200--Hb_004324_300 Hb_000256_130 Hb_000256_130 Hb_000364_040--Hb_000256_130 Hb_000364_040--Hb_000976_280 Hb_000364_040--Hb_000077_390 Hb_015934_030 Hb_015934_030 Hb_000364_040--Hb_015934_030 Hb_011631_010 Hb_011631_010 Hb_000364_040--Hb_011631_010 Hb_006909_060--Hb_000210_010 Hb_000987_060 Hb_000987_060 Hb_006909_060--Hb_000987_060 Hb_000056_170 Hb_000056_170 Hb_006909_060--Hb_000056_170 Hb_171900_020 Hb_171900_020 Hb_006909_060--Hb_171900_020 Hb_006909_060--Hb_001944_020 Hb_000953_050 Hb_000953_050 Hb_005496_180--Hb_000953_050 Hb_002572_050 Hb_002572_050 Hb_005496_180--Hb_002572_050 Hb_000805_230 Hb_000805_230 Hb_005496_180--Hb_000805_230 Hb_000120_160 Hb_000120_160 Hb_005496_180--Hb_000120_160 Hb_002053_130 Hb_002053_130 Hb_005496_180--Hb_002053_130 Hb_002915_070 Hb_002915_070 Hb_005496_180--Hb_002915_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.50752 56.6244 20.9467 11.5865 4.51652 5.51598
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.9323 21.6191 22.6125 9.0172 12.2956

CAGE analysis