Hb_000364_040

Information

Type transcription factor
Description TF Family: ERF
Location Contig364: 38578-39117
Sequence    

Annotation

kegg
ID pop:POPTR_0005s18430g
description POPTRDRAFT_558888; AP2 domain-containing transcription factor family protein
nr
ID XP_012079279.1
description PREDICTED: ethylene-responsive transcription factor ERF010-like [Jatropha curcas]
swissprot
ID Q9FH94
description Ethylene-responsive transcription factor ERF010 OS=Arabidopsis thaliana GN=ERF010 PE=2 SV=1
trembl
ID E6NU87
description JHL03K20.6 protein OS=Jatropha curcas GN=JHL03K20.6 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor erf010-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000364_040 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF010-like [Jatropha curcas]
2 Hb_003605_240 0.1383650475 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
3 Hb_000256_130 0.143162637 - - hypothetical protein 21 [Hevea brasiliensis]
4 Hb_000976_280 0.1485060427 - - PREDICTED: uncharacterized serine-rich protein C215.13-like [Jatropha curcas]
5 Hb_000077_390 0.1535293321 transcription factor TF Family: ERF hypothetical protein POPTR_0019s13330g [Populus trichocarpa]
6 Hb_015934_030 0.1615306671 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_011631_010 0.1655741936 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
8 Hb_005496_180 0.1674651318 - - PREDICTED: U-box domain-containing protein 4-like [Jatropha curcas]
9 Hb_007007_070 0.1682509092 transcription factor TF Family: TCP hypothetical protein MIMGU_mgv1a022855mg, partial [Erythranthe guttata]
10 Hb_003207_100 0.1708857435 transcription factor TF Family: TCP PREDICTED: transcription factor TCP9-like [Jatropha curcas]
11 Hb_000634_070 0.1735656607 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
12 Hb_001484_020 0.1745239503 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
13 Hb_003120_050 0.1752955673 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
14 Hb_028207_040 0.1755297332 - - PREDICTED: beta-hexosaminidase 2 [Jatropha curcas]
15 Hb_000023_250 0.1770438802 - - PREDICTED: VQ motif-containing protein 31-like [Jatropha curcas]
16 Hb_002572_050 0.1778529704 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
17 Hb_002897_050 0.178746167 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
18 Hb_000953_050 0.1790098212 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
19 Hb_000084_240 0.1813045471 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
20 Hb_005701_080 0.1816414587 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000364_040 Hb_000364_040 Hb_003605_240 Hb_003605_240 Hb_000364_040--Hb_003605_240 Hb_000256_130 Hb_000256_130 Hb_000364_040--Hb_000256_130 Hb_000976_280 Hb_000976_280 Hb_000364_040--Hb_000976_280 Hb_000077_390 Hb_000077_390 Hb_000364_040--Hb_000077_390 Hb_015934_030 Hb_015934_030 Hb_000364_040--Hb_015934_030 Hb_011631_010 Hb_011631_010 Hb_000364_040--Hb_011631_010 Hb_002701_220 Hb_002701_220 Hb_003605_240--Hb_002701_220 Hb_003605_240--Hb_000976_280 Hb_001123_200 Hb_001123_200 Hb_003605_240--Hb_001123_200 Hb_006909_060 Hb_006909_060 Hb_003605_240--Hb_006909_060 Hb_005496_180 Hb_005496_180 Hb_003605_240--Hb_005496_180 Hb_000023_250 Hb_000023_250 Hb_000256_130--Hb_000023_250 Hb_000256_130--Hb_000976_280 Hb_012107_010 Hb_012107_010 Hb_000256_130--Hb_012107_010 Hb_000634_070 Hb_000634_070 Hb_000256_130--Hb_000634_070 Hb_005663_070 Hb_005663_070 Hb_000256_130--Hb_005663_070 Hb_000019_040 Hb_000019_040 Hb_000976_280--Hb_000019_040 Hb_001484_020 Hb_001484_020 Hb_000976_280--Hb_001484_020 Hb_006788_140 Hb_006788_140 Hb_000976_280--Hb_006788_140 Hb_013241_010 Hb_013241_010 Hb_000976_280--Hb_013241_010 Hb_000976_280--Hb_000077_390 Hb_000077_390--Hb_001484_020 Hb_003077_050 Hb_003077_050 Hb_000077_390--Hb_003077_050 Hb_127311_010 Hb_127311_010 Hb_000077_390--Hb_127311_010 Hb_000077_390--Hb_013241_010 Hb_000042_330 Hb_000042_330 Hb_000077_390--Hb_000042_330 Hb_015934_030--Hb_000077_390 Hb_003207_100 Hb_003207_100 Hb_015934_030--Hb_003207_100 Hb_015934_030--Hb_003605_240 Hb_015934_030--Hb_003077_050 Hb_007007_070 Hb_007007_070 Hb_015934_030--Hb_007007_070 Hb_000045_260 Hb_000045_260 Hb_011631_010--Hb_000045_260 Hb_002897_050 Hb_002897_050 Hb_011631_010--Hb_002897_050 Hb_005499_010 Hb_005499_010 Hb_011631_010--Hb_005499_010 Hb_002107_060 Hb_002107_060 Hb_011631_010--Hb_002107_060 Hb_000638_280 Hb_000638_280 Hb_011631_010--Hb_000638_280 Hb_000084_240 Hb_000084_240 Hb_011631_010--Hb_000084_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.6085 92.5635 25.0103 9.82106 3.39124 3.79368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.8429 18.0804 16.6642 11.3939 18.235

CAGE analysis