Hb_005663_070

Information

Type -
Description -
Location Contig5663: 91340-92464
Sequence    

Annotation

kegg
ID cic:CICLE_v10002349mg
description hypothetical protein
nr
ID AGC51777.1
description dehydrin protein [Manihot esculenta]
swissprot
ID Q9XJ56
description Phosphoprotein ECPP44 OS=Daucus carota GN=ECPP44 PE=1 SV=1
trembl
ID V9M4U6
description Dehydrin protein OS=Manihot esculenta GN=COR47 PE=2 SV=1
Gene Ontology
ID GO:0006950
description dehydrin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49070: 91326-92498 , PASA_asmbl_49071: 91292-92503
cDNA
(Sanger)
(ID:Location)		 010_A14.ab1: 91327-91889 , 010_E18.ab1: 91449-92258 , 013_P11.ab1: 91328-91949 , 014_B07.ab1: 91326-91889 , 014_L09.ab1: 91327-91949 , 017_B05.ab1: 91326-91889 , 022_G23.ab1: 91326-91889 , 028_G05.ab1: 91326-91889 , 028_P05.ab1: 91330-92057 , 030_L19.ab1: 91292-91889 , 041_N12.ab1: 91326-92057 , 042_I15.ab1: 91326-92183 , 046_B08.ab1: 91330-92233

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005663_070 0.0 - - dehydrin protein [Manihot esculenta]
2 Hb_171900_020 0.1277912737 - - PREDICTED: uncharacterized protein LOC105643207 [Jatropha curcas]
3 Hb_006909_060 0.1354910173 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Solanum lycopersicum]
4 Hb_004724_210 0.1381094128 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001944_020 0.1489117515 - - PREDICTED: uncharacterized protein LOC105636535 [Jatropha curcas]
6 Hb_001235_170 0.151061495 - - PREDICTED: putative glucuronosyltransferase PGSIP8 [Jatropha curcas]
7 Hb_012107_010 0.1533937017 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
8 Hb_001507_030 0.156420302 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
9 Hb_000987_060 0.1581273002 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
10 Hb_000256_130 0.1582156857 - - hypothetical protein 21 [Hevea brasiliensis]
11 Hb_002053_130 0.1660801378 - - UDP-glucose 4-epimerase, putative [Ricinus communis]
12 Hb_005146_080 0.1672887865 - - PREDICTED: uncharacterized protein LOC105636704 isoform X2 [Jatropha curcas]
13 Hb_006788_140 0.1679103072 - - PREDICTED: uncharacterized protein LOC105649915 [Jatropha curcas]
14 Hb_002701_220 0.1697039062 - - PREDICTED: solute carrier family 25 member 44 [Jatropha curcas]
15 Hb_001511_190 0.1710793075 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
16 Hb_023344_080 0.1774770757 - - PREDICTED: uncharacterized protein LOC105644472 isoform X1 [Jatropha curcas]
17 Hb_001699_230 0.1781856476 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]
18 Hb_000042_330 0.1784143442 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007943_050 0.1793067044 - - peroxiredoxin, putative [Ricinus communis]
20 Hb_004117_170 0.1806459227 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]

Gene co-expression network

sample Hb_005663_070 Hb_005663_070 Hb_171900_020 Hb_171900_020 Hb_005663_070--Hb_171900_020 Hb_006909_060 Hb_006909_060 Hb_005663_070--Hb_006909_060 Hb_004724_210 Hb_004724_210 Hb_005663_070--Hb_004724_210 Hb_001944_020 Hb_001944_020 Hb_005663_070--Hb_001944_020 Hb_001235_170 Hb_001235_170 Hb_005663_070--Hb_001235_170 Hb_012107_010 Hb_012107_010 Hb_005663_070--Hb_012107_010 Hb_005146_080 Hb_005146_080 Hb_171900_020--Hb_005146_080 Hb_004117_170 Hb_004117_170 Hb_171900_020--Hb_004117_170 Hb_002042_170 Hb_002042_170 Hb_171900_020--Hb_002042_170 Hb_003925_040 Hb_003925_040 Hb_171900_020--Hb_003925_040 Hb_171900_020--Hb_001235_170 Hb_002053_130 Hb_002053_130 Hb_171900_020--Hb_002053_130 Hb_000210_010 Hb_000210_010 Hb_006909_060--Hb_000210_010 Hb_000987_060 Hb_000987_060 Hb_006909_060--Hb_000987_060 Hb_000056_170 Hb_000056_170 Hb_006909_060--Hb_000056_170 Hb_006909_060--Hb_171900_020 Hb_002701_220 Hb_002701_220 Hb_006909_060--Hb_002701_220 Hb_006909_060--Hb_001944_020 Hb_004724_210--Hb_000987_060 Hb_004724_210--Hb_002701_220 Hb_007943_050 Hb_007943_050 Hb_004724_210--Hb_007943_050 Hb_189208_020 Hb_189208_020 Hb_004724_210--Hb_189208_020 Hb_002042_130 Hb_002042_130 Hb_004724_210--Hb_002042_130 Hb_006788_140 Hb_006788_140 Hb_004724_210--Hb_006788_140 Hb_001944_020--Hb_002701_220 Hb_002217_090 Hb_002217_090 Hb_001944_020--Hb_002217_090 Hb_001944_020--Hb_012107_010 Hb_001944_020--Hb_002053_130 Hb_003747_210 Hb_003747_210 Hb_001944_020--Hb_003747_210 Hb_001500_030 Hb_001500_030 Hb_001944_020--Hb_001500_030 Hb_001638_030 Hb_001638_030 Hb_001235_170--Hb_001638_030 Hb_001235_170--Hb_005146_080 Hb_002685_200 Hb_002685_200 Hb_001235_170--Hb_002685_200 Hb_014068_050 Hb_014068_050 Hb_001235_170--Hb_014068_050 Hb_001376_010 Hb_001376_010 Hb_001235_170--Hb_001376_010 Hb_012107_010--Hb_002053_130 Hb_000417_420 Hb_000417_420 Hb_012107_010--Hb_000417_420 Hb_002639_100 Hb_002639_100 Hb_012107_010--Hb_002639_100 Hb_012107_010--Hb_001500_030 Hb_012107_010--Hb_003747_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
92.55 696.264 214.743 447.68 65.4605 42.3873
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
290.888 274.86 241.467 122.201 49.9066

CAGE analysis