Hb_004724_210

Information

Type -
Description -
Location Contig4724: 163552-164220
Sequence    

Annotation

kegg
ID rcu:RCOM_1281780
description hypothetical protein
nr
ID XP_002523824.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SCV5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1281780 PE=4 SV=1
Gene Ontology
ID GO:0009269
description late embryogenesis abundant hydroxyproline-rich glycoprotein family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44354: 163239-164122
cDNA
(Sanger)
(ID:Location)		 041_M17.ab1: 163490-164122

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004724_210 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000987_060 0.1277608654 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
3 Hb_002701_220 0.1326510358 - - PREDICTED: solute carrier family 25 member 44 [Jatropha curcas]
4 Hb_007943_050 0.1342760215 - - peroxiredoxin, putative [Ricinus communis]
5 Hb_189208_020 0.134589588 - - LRX2, putative [Ricinus communis]
6 Hb_002042_130 0.1370844233 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
7 Hb_006788_140 0.1375787454 - - PREDICTED: uncharacterized protein LOC105649915 [Jatropha curcas]
8 Hb_005663_070 0.1381094128 - - dehydrin protein [Manihot esculenta]
9 Hb_004631_210 0.1409405048 - - hypothetical protein POPTR_0007s05070g [Populus trichocarpa]
10 Hb_000302_260 0.142665746 - - hypothetical protein [Bruguiera gymnorhiza]
11 Hb_001153_180 0.146807114 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
12 Hb_003925_040 0.1478875621 transcription factor TF Family: C2H2 PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 [Jatropha curcas]
13 Hb_001699_230 0.1479656205 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]
14 Hb_171900_020 0.1481175227 - - PREDICTED: uncharacterized protein LOC105643207 [Jatropha curcas]
15 Hb_001235_170 0.1494311045 - - PREDICTED: putative glucuronosyltransferase PGSIP8 [Jatropha curcas]
16 Hb_000152_330 0.1496023547 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
17 Hb_001825_060 0.150351442 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
18 Hb_001944_020 0.1515436492 - - PREDICTED: uncharacterized protein LOC105636535 [Jatropha curcas]
19 Hb_000732_250 0.1550219871 - - PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial-like [Populus euphratica]
20 Hb_006538_080 0.1552428959 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]

Gene co-expression network

sample Hb_004724_210 Hb_004724_210 Hb_000987_060 Hb_000987_060 Hb_004724_210--Hb_000987_060 Hb_002701_220 Hb_002701_220 Hb_004724_210--Hb_002701_220 Hb_007943_050 Hb_007943_050 Hb_004724_210--Hb_007943_050 Hb_189208_020 Hb_189208_020 Hb_004724_210--Hb_189208_020 Hb_002042_130 Hb_002042_130 Hb_004724_210--Hb_002042_130 Hb_006788_140 Hb_006788_140 Hb_004724_210--Hb_006788_140 Hb_001856_200 Hb_001856_200 Hb_000987_060--Hb_001856_200 Hb_000732_250 Hb_000732_250 Hb_000987_060--Hb_000732_250 Hb_000987_060--Hb_006788_140 Hb_000987_060--Hb_007943_050 Hb_006909_060 Hb_006909_060 Hb_000987_060--Hb_006909_060 Hb_002097_200 Hb_002097_200 Hb_000987_060--Hb_002097_200 Hb_001944_020 Hb_001944_020 Hb_002701_220--Hb_001944_020 Hb_003605_240 Hb_003605_240 Hb_002701_220--Hb_003605_240 Hb_000210_010 Hb_000210_010 Hb_002701_220--Hb_000210_010 Hb_012573_040 Hb_012573_040 Hb_002701_220--Hb_012573_040 Hb_002701_220--Hb_006909_060 Hb_001648_030 Hb_001648_030 Hb_002701_220--Hb_001648_030 Hb_000045_300 Hb_000045_300 Hb_007943_050--Hb_000045_300 Hb_009545_090 Hb_009545_090 Hb_007943_050--Hb_009545_090 Hb_005306_190 Hb_005306_190 Hb_007943_050--Hb_005306_190 Hb_007943_050--Hb_000210_010 Hb_095296_010 Hb_095296_010 Hb_007943_050--Hb_095296_010 Hb_010519_040 Hb_010519_040 Hb_007943_050--Hb_010519_040 Hb_189208_020--Hb_002097_200 Hb_001894_050 Hb_001894_050 Hb_189208_020--Hb_001894_050 Hb_003175_030 Hb_003175_030 Hb_189208_020--Hb_003175_030 Hb_005725_210 Hb_005725_210 Hb_189208_020--Hb_005725_210 Hb_189208_020--Hb_006788_140 Hb_001564_080 Hb_001564_080 Hb_189208_020--Hb_001564_080 Hb_000538_230 Hb_000538_230 Hb_002042_130--Hb_000538_230 Hb_000302_260 Hb_000302_260 Hb_002042_130--Hb_000302_260 Hb_034688_020 Hb_034688_020 Hb_002042_130--Hb_034688_020 Hb_000649_110 Hb_000649_110 Hb_002042_130--Hb_000649_110 Hb_001159_110 Hb_001159_110 Hb_002042_130--Hb_001159_110 Hb_005074_030 Hb_005074_030 Hb_002042_130--Hb_005074_030 Hb_000019_040 Hb_000019_040 Hb_006788_140--Hb_000019_040 Hb_006788_140--Hb_003175_030 Hb_000976_280 Hb_000976_280 Hb_006788_140--Hb_000976_280 Hb_006788_140--Hb_002097_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.42125 69.9979 27.8763 32.6113 15.3244 10.0924
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.7299 33.4129 23.2156 23.2393 11.9939

CAGE analysis