Hb_006909_060

Information

Type -
Description -
Location Contig6909: 70544-72870
Sequence    

Annotation

kegg
ID sly:101246720
description eukaryotic peptide chain release factor subunit 1-3-like
nr
ID XP_004239730.1
description PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Solanum lycopersicum]
swissprot
ID Q9LPV8
description Eukaryotic peptide chain release factor subunit 1-2 OS=Arabidopsis thaliana GN=ERF1-2 PE=1 SV=1
trembl
ID K4C2J8
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc05g055210.1 PE=4 SV=1
Gene Ontology
ID GO:0016149
description eukaryotic peptide chain release factor subunit 1-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54336: 70844-71018 , PASA_asmbl_54337: 71759-72159
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006909_060 0.0 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Solanum lycopersicum]
2 Hb_000210_010 0.1102410823 - - PREDICTED: probable CCR4-associated factor 1 homolog 11 [Jatropha curcas]
3 Hb_000987_060 0.1160427694 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
4 Hb_000056_170 0.1243939183 - - conserved hypothetical protein [Ricinus communis]
5 Hb_171900_020 0.127039128 - - PREDICTED: uncharacterized protein LOC105643207 [Jatropha curcas]
6 Hb_002701_220 0.1309369333 - - PREDICTED: solute carrier family 25 member 44 [Jatropha curcas]
7 Hb_001944_020 0.1339219352 - - PREDICTED: uncharacterized protein LOC105636535 [Jatropha curcas]
8 Hb_005663_070 0.1354910173 - - dehydrin protein [Manihot esculenta]
9 Hb_007943_050 0.1357229322 - - peroxiredoxin, putative [Ricinus communis]
10 Hb_003605_240 0.1404353504 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
11 Hb_023344_080 0.1475893852 - - PREDICTED: uncharacterized protein LOC105644472 isoform X1 [Jatropha curcas]
12 Hb_010519_040 0.1476856311 - - PREDICTED: uncharacterized protein LOC105643567 [Jatropha curcas]
13 Hb_006788_140 0.1481778648 - - PREDICTED: uncharacterized protein LOC105649915 [Jatropha curcas]
14 Hb_002053_130 0.1488959382 - - UDP-glucose 4-epimerase, putative [Ricinus communis]
15 Hb_084490_010 0.1557527542 - - PREDICTED: protein root UVB sensitive 6 isoform X2 [Jatropha curcas]
16 Hb_000179_240 0.1558263017 - - PREDICTED: threonine synthase 1, chloroplastic [Jatropha curcas]
17 Hb_003925_040 0.1564816955 transcription factor TF Family: C2H2 PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 [Jatropha curcas]
18 Hb_012107_010 0.1583260736 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
19 Hb_001856_200 0.1585256724 - - Esterase PIR7B, putative [Ricinus communis]
20 Hb_001123_200 0.1599998761 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006909_060 Hb_006909_060 Hb_000210_010 Hb_000210_010 Hb_006909_060--Hb_000210_010 Hb_000987_060 Hb_000987_060 Hb_006909_060--Hb_000987_060 Hb_000056_170 Hb_000056_170 Hb_006909_060--Hb_000056_170 Hb_171900_020 Hb_171900_020 Hb_006909_060--Hb_171900_020 Hb_002701_220 Hb_002701_220 Hb_006909_060--Hb_002701_220 Hb_001944_020 Hb_001944_020 Hb_006909_060--Hb_001944_020 Hb_007943_050 Hb_007943_050 Hb_000210_010--Hb_007943_050 Hb_000649_130 Hb_000649_130 Hb_000210_010--Hb_000649_130 Hb_001856_200 Hb_001856_200 Hb_000210_010--Hb_001856_200 Hb_000342_060 Hb_000342_060 Hb_000210_010--Hb_000342_060 Hb_000164_020 Hb_000164_020 Hb_000210_010--Hb_000164_020 Hb_000987_060--Hb_001856_200 Hb_000732_250 Hb_000732_250 Hb_000987_060--Hb_000732_250 Hb_006788_140 Hb_006788_140 Hb_000987_060--Hb_006788_140 Hb_000987_060--Hb_007943_050 Hb_002097_200 Hb_002097_200 Hb_000987_060--Hb_002097_200 Hb_003411_030 Hb_003411_030 Hb_000056_170--Hb_003411_030 Hb_002572_050 Hb_002572_050 Hb_000056_170--Hb_002572_050 Hb_000258_380 Hb_000258_380 Hb_000056_170--Hb_000258_380 Hb_000953_050 Hb_000953_050 Hb_000056_170--Hb_000953_050 Hb_000056_170--Hb_000210_010 Hb_005146_080 Hb_005146_080 Hb_171900_020--Hb_005146_080 Hb_004117_170 Hb_004117_170 Hb_171900_020--Hb_004117_170 Hb_002042_170 Hb_002042_170 Hb_171900_020--Hb_002042_170 Hb_003925_040 Hb_003925_040 Hb_171900_020--Hb_003925_040 Hb_001235_170 Hb_001235_170 Hb_171900_020--Hb_001235_170 Hb_002053_130 Hb_002053_130 Hb_171900_020--Hb_002053_130 Hb_002701_220--Hb_001944_020 Hb_003605_240 Hb_003605_240 Hb_002701_220--Hb_003605_240 Hb_002701_220--Hb_000210_010 Hb_012573_040 Hb_012573_040 Hb_002701_220--Hb_012573_040 Hb_001648_030 Hb_001648_030 Hb_002701_220--Hb_001648_030 Hb_002217_090 Hb_002217_090 Hb_001944_020--Hb_002217_090 Hb_012107_010 Hb_012107_010 Hb_001944_020--Hb_012107_010 Hb_001944_020--Hb_002053_130 Hb_003747_210 Hb_003747_210 Hb_001944_020--Hb_003747_210 Hb_001500_030 Hb_001500_030 Hb_001944_020--Hb_001500_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.61754 38.5858 13.5448 18.6114 3.61156 6.42455
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.84648 22.1275 17.4508 4.98359 4.45132

CAGE analysis