Hb_000649_130

Information

Type -
Description -
Location Contig649: 143598-144176
Sequence    

Annotation

kegg
ID rcu:RCOM_0597990
description Polcalcin Jun o, putative (EC:1.3.1.74)
nr
ID XP_002525994.1
description Polcalcin Jun o, putative [Ricinus communis]
swissprot
ID Q9FYK2
description Probable calcium-binding protein CML25 OS=Arabidopsis thaliana GN=CML25 PE=2 SV=1
trembl
ID B9SJ25
description Polcalcin Jun o, putative OS=Ricinus communis GN=RCOM_0597990 PE=4 SV=1
Gene Ontology
ID GO:0005634
description probable calcium-binding protein cml25

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000649_130 0.0 - - Polcalcin Jun o, putative [Ricinus communis]
2 Hb_005074_030 0.0995683246 - - -
3 Hb_000210_010 0.1063107884 - - PREDICTED: probable CCR4-associated factor 1 homolog 11 [Jatropha curcas]
4 Hb_000178_130 0.1147963982 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
5 Hb_000327_380 0.1245459997 - - hypothetical protein JCGZ_06621 [Jatropha curcas]
6 Hb_116608_010 0.1307082814 transcription factor TF Family: NF-YC DNA binding protein, putative [Ricinus communis]
7 Hb_007943_050 0.1308351982 - - peroxiredoxin, putative [Ricinus communis]
8 Hb_000327_230 0.1310279076 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
9 Hb_008772_010 0.1314773804 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001123_060 0.1327538307 - - PREDICTED: ALBINO3-like protein 2, chloroplastic [Jatropha curcas]
11 Hb_000045_300 0.1329994757 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier isoform X1 [Jatropha curcas]
12 Hb_017987_050 0.1349813475 - - PREDICTED: branched-chain-amino-acid aminotransferase 5, chloroplastic-like [Jatropha curcas]
13 Hb_000430_020 0.1375423394 - - -
14 Hb_110560_010 0.1398576829 - - ATP binding protein, putative [Ricinus communis]
15 Hb_000805_240 0.1409360437 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
16 Hb_000696_290 0.1414793096 - - PREDICTED: UPF0664 stress-induced protein C29B12.11c [Jatropha curcas]
17 Hb_000115_220 0.1417969096 - - hypothetical protein CISIN_1g0379742mg, partial [Citrus sinensis]
18 Hb_004052_050 0.141919439 - - PREDICTED: uncharacterized protein LOC105640640 [Jatropha curcas]
19 Hb_000450_130 0.1445479652 - - PREDICTED: uncharacterized protein LOC105630216 [Jatropha curcas]
20 Hb_000749_050 0.1447354991 - - mitochondrial thioredoxin [Hevea brasiliensis]

Gene co-expression network

sample Hb_000649_130 Hb_000649_130 Hb_005074_030 Hb_005074_030 Hb_000649_130--Hb_005074_030 Hb_000210_010 Hb_000210_010 Hb_000649_130--Hb_000210_010 Hb_000178_130 Hb_000178_130 Hb_000649_130--Hb_000178_130 Hb_000327_380 Hb_000327_380 Hb_000649_130--Hb_000327_380 Hb_116608_010 Hb_116608_010 Hb_000649_130--Hb_116608_010 Hb_007943_050 Hb_007943_050 Hb_000649_130--Hb_007943_050 Hb_000430_020 Hb_000430_020 Hb_005074_030--Hb_000430_020 Hb_001159_110 Hb_001159_110 Hb_005074_030--Hb_001159_110 Hb_001123_060 Hb_001123_060 Hb_005074_030--Hb_001123_060 Hb_000538_230 Hb_000538_230 Hb_005074_030--Hb_000538_230 Hb_000749_050 Hb_000749_050 Hb_005074_030--Hb_000749_050 Hb_000210_010--Hb_007943_050 Hb_006909_060 Hb_006909_060 Hb_000210_010--Hb_006909_060 Hb_001856_200 Hb_001856_200 Hb_000210_010--Hb_001856_200 Hb_000342_060 Hb_000342_060 Hb_000210_010--Hb_000342_060 Hb_000164_020 Hb_000164_020 Hb_000210_010--Hb_000164_020 Hb_005306_190 Hb_005306_190 Hb_000178_130--Hb_005306_190 Hb_000178_130--Hb_000430_020 Hb_004994_140 Hb_004994_140 Hb_000178_130--Hb_004994_140 Hb_000417_040 Hb_000417_040 Hb_000178_130--Hb_000417_040 Hb_003389_040 Hb_003389_040 Hb_000178_130--Hb_003389_040 Hb_000178_130--Hb_001123_060 Hb_000009_290 Hb_000009_290 Hb_000327_380--Hb_000009_290 Hb_000805_240 Hb_000805_240 Hb_000327_380--Hb_000805_240 Hb_010560_030 Hb_010560_030 Hb_000327_380--Hb_010560_030 Hb_000327_230 Hb_000327_230 Hb_000327_380--Hb_000327_230 Hb_003362_030 Hb_003362_030 Hb_000327_380--Hb_003362_030 Hb_000045_300 Hb_000045_300 Hb_000327_380--Hb_000045_300 Hb_004052_050 Hb_004052_050 Hb_116608_010--Hb_004052_050 Hb_000696_290 Hb_000696_290 Hb_116608_010--Hb_000696_290 Hb_153544_010 Hb_153544_010 Hb_116608_010--Hb_153544_010 Hb_000172_640 Hb_000172_640 Hb_116608_010--Hb_000172_640 Hb_000331_470 Hb_000331_470 Hb_116608_010--Hb_000331_470 Hb_011671_100 Hb_011671_100 Hb_116608_010--Hb_011671_100 Hb_007943_050--Hb_000045_300 Hb_009545_090 Hb_009545_090 Hb_007943_050--Hb_009545_090 Hb_007943_050--Hb_005306_190 Hb_095296_010 Hb_095296_010 Hb_007943_050--Hb_095296_010 Hb_010519_040 Hb_010519_040 Hb_007943_050--Hb_010519_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.0102 45.5226 22.0157 48.8153 12.932 11.9848
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.6608 81.1154 41.0631 19.0262 10.6291

CAGE analysis