Hb_000164_020

Information

Type -
Description -
Location Contig164: 16805-22584
Sequence    

Annotation

kegg
ID rcu:RCOM_0180980
description actin binding protein, putative
nr
ID XP_002522822.1
description actin binding protein, putative [Ricinus communis]
swissprot
ID Q94B77
description Formin-like protein 5 OS=Arabidopsis thaliana GN=FH5 PE=2 SV=2
trembl
ID B9SA03
description Formin-like protein OS=Ricinus communis GN=RCOM_0180980 PE=3 SV=1
Gene Ontology
ID GO:0005618
description formin-like protein 5 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15050: 16681-17154 , PASA_asmbl_15053: 20374-21572
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000164_020 0.0 - - actin binding protein, putative [Ricinus communis]
2 Hb_001246_110 0.068446108 - - PREDICTED: probable purine permease 11 [Jatropha curcas]
3 Hb_000342_060 0.0788229483 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial-like isoform X1 [Nicotiana sylvestris]
4 Hb_000869_080 0.0840190735 - - PREDICTED: uncharacterized protein LOC105641084 isoform X2 [Jatropha curcas]
5 Hb_004208_030 0.0847288462 transcription factor TF Family: MYB-related PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
6 Hb_001766_060 0.0926521613 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002217_020 0.097692124 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
8 Hb_095296_010 0.0994398228 - - PREDICTED: syntaxin-32 [Jatropha curcas]
9 Hb_000331_670 0.1014659541 - - PREDICTED: protein tipD [Jatropha curcas]
10 Hb_002754_010 0.1031061151 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
11 Hb_000868_110 0.1033379556 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
12 Hb_000221_190 0.1039537849 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
13 Hb_002073_200 0.1044047491 - - Phosphatase 2A-2 [Theobroma cacao]
14 Hb_012564_030 0.1050771927 - - coronatine-insensitive 1 [Hevea brasiliensis]
15 Hb_001377_260 0.1053371702 - - protein with unknown function [Ricinus communis]
16 Hb_000015_170 0.1060212288 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000856_380 0.1060913334 - - ubiquitin-conjugating enzyme [Medicago truncatula]
18 Hb_000729_030 0.1069375706 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
19 Hb_012762_030 0.1075281488 - - PREDICTED: uncharacterized protein LOC105634062 [Jatropha curcas]
20 Hb_005162_090 0.1081122241 - - PREDICTED: uncharacterized protein LOC105648425 [Jatropha curcas]

Gene co-expression network

sample Hb_000164_020 Hb_000164_020 Hb_001246_110 Hb_001246_110 Hb_000164_020--Hb_001246_110 Hb_000342_060 Hb_000342_060 Hb_000164_020--Hb_000342_060 Hb_000869_080 Hb_000869_080 Hb_000164_020--Hb_000869_080 Hb_004208_030 Hb_004208_030 Hb_000164_020--Hb_004208_030 Hb_001766_060 Hb_001766_060 Hb_000164_020--Hb_001766_060 Hb_002217_020 Hb_002217_020 Hb_000164_020--Hb_002217_020 Hb_001246_110--Hb_001766_060 Hb_000729_030 Hb_000729_030 Hb_001246_110--Hb_000729_030 Hb_001246_110--Hb_000869_080 Hb_012019_010 Hb_012019_010 Hb_001246_110--Hb_012019_010 Hb_001246_110--Hb_000342_060 Hb_000056_210 Hb_000056_210 Hb_000342_060--Hb_000056_210 Hb_095296_010 Hb_095296_010 Hb_000342_060--Hb_095296_010 Hb_000868_110 Hb_000868_110 Hb_000342_060--Hb_000868_110 Hb_000856_380 Hb_000856_380 Hb_000342_060--Hb_000856_380 Hb_000869_080--Hb_000729_030 Hb_164010_040 Hb_164010_040 Hb_000869_080--Hb_164010_040 Hb_013358_040 Hb_013358_040 Hb_000869_080--Hb_013358_040 Hb_000738_020 Hb_000738_020 Hb_000869_080--Hb_000738_020 Hb_005162_090 Hb_005162_090 Hb_000869_080--Hb_005162_090 Hb_002073_200 Hb_002073_200 Hb_000869_080--Hb_002073_200 Hb_004208_030--Hb_013358_040 Hb_001247_250 Hb_001247_250 Hb_004208_030--Hb_001247_250 Hb_002754_010 Hb_002754_010 Hb_004208_030--Hb_002754_010 Hb_004208_030--Hb_002073_200 Hb_000172_430 Hb_000172_430 Hb_004208_030--Hb_000172_430 Hb_002110_150 Hb_002110_150 Hb_004208_030--Hb_002110_150 Hb_001245_100 Hb_001245_100 Hb_001766_060--Hb_001245_100 Hb_003151_040 Hb_003151_040 Hb_001766_060--Hb_003151_040 Hb_005846_040 Hb_005846_040 Hb_001766_060--Hb_005846_040 Hb_027380_050 Hb_027380_050 Hb_001766_060--Hb_027380_050 Hb_001766_060--Hb_012019_010 Hb_022250_060 Hb_022250_060 Hb_002217_020--Hb_022250_060 Hb_007317_010 Hb_007317_010 Hb_002217_020--Hb_007317_010 Hb_003657_010 Hb_003657_010 Hb_002217_020--Hb_003657_010 Hb_136509_010 Hb_136509_010 Hb_002217_020--Hb_136509_010 Hb_001856_200 Hb_001856_200 Hb_002217_020--Hb_001856_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.02452 12.5575 7.22259 7.45936 3.3909 6.33971
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.271 12.2627 10.9459 3.92482 6.23278

CAGE analysis