Hb_000342_060

Information

Type -
Description -
Location Contig342: 71246-75130
Sequence    

Annotation

kegg
ID ath:AT5G11770
description NADH dehydrogenase (ubiquinone) Fe-S protein 7
nr
ID XP_009790602.1
description PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial-like isoform X1 [Nicotiana sylvestris]
swissprot
ID Q42577
description NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Arabidopsis thaliana GN=At5g11770 PE=2 SV=1
trembl
ID A0A067KPA3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07686 PE=3 SV=1
Gene Ontology
ID GO:0005747
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35738: 71562-75114
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000342_060 0.0 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial-like isoform X1 [Nicotiana sylvestris]
2 Hb_000164_020 0.0788229483 - - actin binding protein, putative [Ricinus communis]
3 Hb_001246_110 0.0897638373 - - PREDICTED: probable purine permease 11 [Jatropha curcas]
4 Hb_000056_210 0.0941403996 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26900, mitochondrial [Jatropha curcas]
5 Hb_095296_010 0.0963955979 - - PREDICTED: syntaxin-32 [Jatropha curcas]
6 Hb_000868_110 0.0991421725 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
7 Hb_000856_380 0.1005003604 - - ubiquitin-conjugating enzyme [Medicago truncatula]
8 Hb_139294_010 0.1038143614 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_000869_080 0.1087703287 - - PREDICTED: uncharacterized protein LOC105641084 isoform X2 [Jatropha curcas]
10 Hb_000178_130 0.1092046509 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
11 Hb_002813_040 0.1101783799 - - PREDICTED: PRA1 family protein G2 [Jatropha curcas]
12 Hb_000120_330 0.1106508248 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001437_150 0.1135895236 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
14 Hb_004032_360 0.1142350309 - - PREDICTED: uncharacterized protein LOC103403885 [Malus domestica]
15 Hb_001766_060 0.1145876042 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002073_200 0.1146003177 - - Phosphatase 2A-2 [Theobroma cacao]
17 Hb_003581_070 0.1150306676 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Malus domestica]
18 Hb_000019_050 0.1161765893 - - PREDICTED: protein NETWORKED 3A-like [Jatropha curcas]
19 Hb_003020_270 0.1162342681 - - PREDICTED: ras-related protein Rab2BV [Jatropha curcas]
20 Hb_000221_190 0.1165831049 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_000342_060 Hb_000342_060 Hb_000164_020 Hb_000164_020 Hb_000342_060--Hb_000164_020 Hb_001246_110 Hb_001246_110 Hb_000342_060--Hb_001246_110 Hb_000056_210 Hb_000056_210 Hb_000342_060--Hb_000056_210 Hb_095296_010 Hb_095296_010 Hb_000342_060--Hb_095296_010 Hb_000868_110 Hb_000868_110 Hb_000342_060--Hb_000868_110 Hb_000856_380 Hb_000856_380 Hb_000342_060--Hb_000856_380 Hb_000164_020--Hb_001246_110 Hb_000869_080 Hb_000869_080 Hb_000164_020--Hb_000869_080 Hb_004208_030 Hb_004208_030 Hb_000164_020--Hb_004208_030 Hb_001766_060 Hb_001766_060 Hb_000164_020--Hb_001766_060 Hb_002217_020 Hb_002217_020 Hb_000164_020--Hb_002217_020 Hb_001246_110--Hb_001766_060 Hb_000729_030 Hb_000729_030 Hb_001246_110--Hb_000729_030 Hb_001246_110--Hb_000869_080 Hb_012019_010 Hb_012019_010 Hb_001246_110--Hb_012019_010 Hb_000696_150 Hb_000696_150 Hb_000056_210--Hb_000696_150 Hb_000904_070 Hb_000904_070 Hb_000056_210--Hb_000904_070 Hb_001195_600 Hb_001195_600 Hb_000056_210--Hb_001195_600 Hb_000866_220 Hb_000866_220 Hb_000056_210--Hb_000866_220 Hb_004374_070 Hb_004374_070 Hb_000056_210--Hb_004374_070 Hb_095296_010--Hb_000868_110 Hb_002073_200 Hb_002073_200 Hb_095296_010--Hb_002073_200 Hb_005116_060 Hb_005116_060 Hb_095296_010--Hb_005116_060 Hb_003020_270 Hb_003020_270 Hb_095296_010--Hb_003020_270 Hb_006816_350 Hb_006816_350 Hb_095296_010--Hb_006816_350 Hb_095296_010--Hb_000869_080 Hb_000868_110--Hb_002073_200 Hb_164010_040 Hb_164010_040 Hb_000868_110--Hb_164010_040 Hb_003001_080 Hb_003001_080 Hb_000868_110--Hb_003001_080 Hb_021576_110 Hb_021576_110 Hb_000868_110--Hb_021576_110 Hb_000868_110--Hb_000869_080 Hb_002234_100 Hb_002234_100 Hb_000856_380--Hb_002234_100 Hb_001437_150 Hb_001437_150 Hb_000856_380--Hb_001437_150 Hb_180424_010 Hb_180424_010 Hb_000856_380--Hb_180424_010 Hb_000856_380--Hb_000868_110 Hb_000367_160 Hb_000367_160 Hb_000856_380--Hb_000367_160 Hb_010560_020 Hb_010560_020 Hb_000856_380--Hb_010560_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.6263 35.9793 19.4874 23.6066 15.352 17.9872
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.8505 47.9793 28.2351 8.21592 16.356

CAGE analysis