Hb_000172_640

Information

Type -
Description -
Location Contig172: 694089-703030
Sequence    

Annotation

kegg
ID pop:POPTR_0007s06250g
description POPTRDRAFT_562668; hypothetical protein
nr
ID XP_002310594.1
description hypothetical protein POPTR_0007s06250g [Populus trichocarpa]
swissprot
ID Q8BKC5
description Importin-5 OS=Mus musculus GN=Ipo5 PE=1 SV=3
trembl
ID B9HFV5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s06250g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16203: 702717-703082
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_640 0.0 - - hypothetical protein POPTR_0007s06250g [Populus trichocarpa]
2 Hb_005365_030 0.0808521409 - - hypothetical protein POPTR_0002s24010g [Populus trichocarpa]
3 Hb_124953_020 0.0880748054 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]
4 Hb_004800_060 0.0951477736 - - PREDICTED: uncharacterized protein LOC105643856 [Jatropha curcas]
5 Hb_002192_010 0.0952206881 - - -
6 Hb_027472_040 0.0972974937 - - SKP1 [Hevea brasiliensis]
7 Hb_002078_140 0.0976099418 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
8 Hb_000610_050 0.1000931566 - - skp1, putative [Ricinus communis]
9 Hb_001691_140 0.1017134399 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
10 Hb_000589_260 0.1041579635 - - 3-hydroxybutyryl-CoA dehydratase, putative [Ricinus communis]
11 Hb_011671_100 0.1090854269 - - 60S ribosomal protein L15 [Populus trichocarpa]
12 Hb_000331_470 0.110174716 - - PREDICTED: uncharacterized protein LOC105136689 [Populus euphratica]
13 Hb_001427_110 0.1126453259 - - PREDICTED: LOW QUALITY PROTEIN: yrdC domain-containing protein, mitochondrial [Jatropha curcas]
14 Hb_116608_010 0.1127903967 transcription factor TF Family: NF-YC DNA binding protein, putative [Ricinus communis]
15 Hb_029388_020 0.1164340769 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000342_100 0.1184143322 - - PREDICTED: PITH domain-containing protein 1 [Jatropha curcas]
17 Hb_007423_040 0.1186776672 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
18 Hb_001016_150 0.1221852637 - - Rop1 [Hevea brasiliensis]
19 Hb_000062_070 0.1224603818 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
20 Hb_002320_040 0.1231050371 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]

Gene co-expression network

sample Hb_000172_640 Hb_000172_640 Hb_005365_030 Hb_005365_030 Hb_000172_640--Hb_005365_030 Hb_124953_020 Hb_124953_020 Hb_000172_640--Hb_124953_020 Hb_004800_060 Hb_004800_060 Hb_000172_640--Hb_004800_060 Hb_002192_010 Hb_002192_010 Hb_000172_640--Hb_002192_010 Hb_027472_040 Hb_027472_040 Hb_000172_640--Hb_027472_040 Hb_002078_140 Hb_002078_140 Hb_000172_640--Hb_002078_140 Hb_005365_030--Hb_124953_020 Hb_029388_020 Hb_029388_020 Hb_005365_030--Hb_029388_020 Hb_005365_030--Hb_002078_140 Hb_002320_040 Hb_002320_040 Hb_005365_030--Hb_002320_040 Hb_001691_140 Hb_001691_140 Hb_005365_030--Hb_001691_140 Hb_005365_030--Hb_027472_040 Hb_001016_150 Hb_001016_150 Hb_124953_020--Hb_001016_150 Hb_124953_020--Hb_002078_140 Hb_124953_020--Hb_004800_060 Hb_001863_430 Hb_001863_430 Hb_124953_020--Hb_001863_430 Hb_124953_020--Hb_002192_010 Hb_004162_210 Hb_004162_210 Hb_004800_060--Hb_004162_210 Hb_003106_220 Hb_003106_220 Hb_004800_060--Hb_003106_220 Hb_004800_060--Hb_001016_150 Hb_126861_010 Hb_126861_010 Hb_004800_060--Hb_126861_010 Hb_007423_040 Hb_007423_040 Hb_002192_010--Hb_007423_040 Hb_002192_010--Hb_002078_140 Hb_005773_060 Hb_005773_060 Hb_002192_010--Hb_005773_060 Hb_000610_050 Hb_000610_050 Hb_002192_010--Hb_000610_050 Hb_027472_040--Hb_000610_050 Hb_003125_200 Hb_003125_200 Hb_027472_040--Hb_003125_200 Hb_001504_020 Hb_001504_020 Hb_027472_040--Hb_001504_020 Hb_027472_040--Hb_029388_020 Hb_000457_100 Hb_000457_100 Hb_027472_040--Hb_000457_100 Hb_007576_080 Hb_007576_080 Hb_027472_040--Hb_007576_080 Hb_002078_140--Hb_001691_140 Hb_001341_150 Hb_001341_150 Hb_002078_140--Hb_001341_150 Hb_000136_260 Hb_000136_260 Hb_002078_140--Hb_000136_260 Hb_002078_140--Hb_001016_150 Hb_002078_140--Hb_001863_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.195392 0.299365 0.251719 0.296631 0.283443 0.215584
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.428132 0.701855 0.187285 0.340047 0.059663

CAGE analysis