Hb_005146_080

Information

Type -
Description -
Location Contig5146: 89502-95708
Sequence    

Annotation

kegg
ID rcu:RCOM_0724200
description UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase, putative (EC:2.4.1.227)
nr
ID XP_012075433.1
description PREDICTED: uncharacterized protein LOC105636704 isoform X2 [Jatropha curcas]
swissprot
ID A6H195
description UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=murG PE=3 SV=1
trembl
ID A0A067KJJ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10702 PE=3 SV=1
Gene Ontology
ID GO:0030246
description udp-n-acetylglucosamine--n-acetylmuramyl- pyrophosphoryl-undecaprenol n-acetylglucosamine

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46463: 91491-95767 , PASA_asmbl_46464: 91998-95316
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005146_080 0.0 - - PREDICTED: uncharacterized protein LOC105636704 isoform X2 [Jatropha curcas]
2 Hb_171900_020 0.1013487644 - - PREDICTED: uncharacterized protein LOC105643207 [Jatropha curcas]
3 Hb_004450_050 0.126554126 - - PREDICTED: histone chaperone ASF1B [Populus euphratica]
4 Hb_001235_170 0.1301914933 - - PREDICTED: putative glucuronosyltransferase PGSIP8 [Jatropha curcas]
5 Hb_006643_020 0.1345836604 - - PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
6 Hb_014068_050 0.1371730353 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
7 Hb_000170_240 0.142044652 - - PREDICTED: auxilin-related protein 1 [Jatropha curcas]
8 Hb_084490_010 0.1470836455 - - PREDICTED: protein root UVB sensitive 6 isoform X2 [Jatropha curcas]
9 Hb_000815_240 0.1486723351 - - PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like isoform X1 [Jatropha curcas]
10 Hb_000802_090 0.1528688661 - - ornithine aminotransferase, putative [Ricinus communis]
11 Hb_000205_240 0.1535918048 - - ubiquitin-protein ligase, putative [Ricinus communis]
12 Hb_001328_080 0.1553028801 - - PREDICTED: importin subunit alpha-1b [Jatropha curcas]
13 Hb_002869_050 0.1569951722 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
14 Hb_000395_040 0.1572606244 - - PREDICTED: uncharacterized protein LOC105645576 [Jatropha curcas]
15 Hb_005188_030 0.1578274402 - - amino acid transporter, putative [Ricinus communis]
16 Hb_004117_170 0.1614204073 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
17 Hb_009545_090 0.1626455486 - - hypothetical protein JCGZ_02186 [Jatropha curcas]
18 Hb_000012_210 0.1626960209 - - PREDICTED: serine hydroxymethyltransferase 3, chloroplastic [Jatropha curcas]
19 Hb_021443_090 0.1629313862 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
20 Hb_000538_240 0.164799295 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]

Gene co-expression network

sample Hb_005146_080 Hb_005146_080 Hb_171900_020 Hb_171900_020 Hb_005146_080--Hb_171900_020 Hb_004450_050 Hb_004450_050 Hb_005146_080--Hb_004450_050 Hb_001235_170 Hb_001235_170 Hb_005146_080--Hb_001235_170 Hb_006643_020 Hb_006643_020 Hb_005146_080--Hb_006643_020 Hb_014068_050 Hb_014068_050 Hb_005146_080--Hb_014068_050 Hb_000170_240 Hb_000170_240 Hb_005146_080--Hb_000170_240 Hb_004117_170 Hb_004117_170 Hb_171900_020--Hb_004117_170 Hb_002042_170 Hb_002042_170 Hb_171900_020--Hb_002042_170 Hb_003925_040 Hb_003925_040 Hb_171900_020--Hb_003925_040 Hb_171900_020--Hb_001235_170 Hb_002053_130 Hb_002053_130 Hb_171900_020--Hb_002053_130 Hb_001396_110 Hb_001396_110 Hb_004450_050--Hb_001396_110 Hb_009627_030 Hb_009627_030 Hb_004450_050--Hb_009627_030 Hb_000815_240 Hb_000815_240 Hb_004450_050--Hb_000815_240 Hb_005188_030 Hb_005188_030 Hb_004450_050--Hb_005188_030 Hb_006441_020 Hb_006441_020 Hb_004450_050--Hb_006441_020 Hb_001638_030 Hb_001638_030 Hb_001235_170--Hb_001638_030 Hb_002685_200 Hb_002685_200 Hb_001235_170--Hb_002685_200 Hb_001235_170--Hb_014068_050 Hb_001376_010 Hb_001376_010 Hb_001235_170--Hb_001376_010 Hb_006060_020 Hb_006060_020 Hb_006643_020--Hb_006060_020 Hb_006643_020--Hb_001396_110 Hb_000215_320 Hb_000215_320 Hb_006643_020--Hb_000215_320 Hb_001911_040 Hb_001911_040 Hb_006643_020--Hb_001911_040 Hb_085972_010 Hb_085972_010 Hb_006643_020--Hb_085972_010 Hb_011360_050 Hb_011360_050 Hb_006643_020--Hb_011360_050 Hb_006538_080 Hb_006538_080 Hb_014068_050--Hb_006538_080 Hb_000111_180 Hb_000111_180 Hb_014068_050--Hb_000111_180 Hb_002301_170 Hb_002301_170 Hb_014068_050--Hb_002301_170 Hb_000512_010 Hb_000512_010 Hb_014068_050--Hb_000512_010 Hb_052764_030 Hb_052764_030 Hb_014068_050--Hb_052764_030 Hb_000205_240 Hb_000205_240 Hb_014068_050--Hb_000205_240 Hb_000802_090 Hb_000802_090 Hb_000170_240--Hb_000802_090 Hb_002869_050 Hb_002869_050 Hb_000170_240--Hb_002869_050 Hb_001205_200 Hb_001205_200 Hb_000170_240--Hb_001205_200 Hb_000676_260 Hb_000676_260 Hb_000170_240--Hb_000676_260 Hb_000418_010 Hb_000418_010 Hb_000170_240--Hb_000418_010 Hb_000170_240--Hb_011360_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.64673 17.4081 9.92104 17.169 3.74575 3.07412
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.56832 8.66386 5.72997 8.17709 1.24628

CAGE analysis