Hb_002685_200

Information

Type -
Description -
Location Contig2685: 180800-186155
Sequence    

Annotation

kegg
ID rcu:RCOM_1321460
description hypothetical protein
nr
ID XP_012070394.1
description PREDICTED: uncharacterized protein LOC105632583 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KXF2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02673 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27979: 183123-184220 , PASA_asmbl_27980: 183333-185108 , PASA_asmbl_27981: 185607-185854
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002685_200 0.0 - - PREDICTED: uncharacterized protein LOC105632583 [Jatropha curcas]
2 Hb_000179_240 0.1095424904 - - PREDICTED: threonine synthase 1, chloroplastic [Jatropha curcas]
3 Hb_001638_030 0.113040291 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
4 Hb_012634_020 0.1150739607 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Jatropha curcas]
5 Hb_003077_050 0.1239126529 - - PREDICTED: probable protein phosphatase 2C 63 [Jatropha curcas]
6 Hb_002701_210 0.1252792393 - - Protein COBRA precursor, putative [Ricinus communis]
7 Hb_000084_240 0.1264339303 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
8 Hb_000186_200 0.1280174054 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
9 Hb_001235_170 0.1310226845 - - PREDICTED: putative glucuronosyltransferase PGSIP8 [Jatropha curcas]
10 Hb_004635_030 0.1328936344 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
11 Hb_000445_100 0.1370089597 - - PREDICTED: glutathione S-transferase TCHQD [Jatropha curcas]
12 Hb_000045_260 0.1403650519 - - protein with unknown function [Ricinus communis]
13 Hb_000925_030 0.1407509234 - - ATP-dependent RNA helicase, putative [Ricinus communis]
14 Hb_001484_020 0.1422541706 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
15 Hb_004117_170 0.1453245359 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
16 Hb_000749_070 0.1457955821 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
17 Hb_004965_050 0.1460757228 - - PREDICTED: uncharacterized protein LOC105645055 [Jatropha curcas]
18 Hb_007253_010 0.1464649066 - - syntaxin, putative [Ricinus communis]
19 Hb_003224_030 0.1514630217 - - hypothetical protein POPTR_0077s002402g, partial [Populus trichocarpa]
20 Hb_004108_240 0.1536720699 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]

Gene co-expression network

sample Hb_002685_200 Hb_002685_200 Hb_000179_240 Hb_000179_240 Hb_002685_200--Hb_000179_240 Hb_001638_030 Hb_001638_030 Hb_002685_200--Hb_001638_030 Hb_012634_020 Hb_012634_020 Hb_002685_200--Hb_012634_020 Hb_003077_050 Hb_003077_050 Hb_002685_200--Hb_003077_050 Hb_002701_210 Hb_002701_210 Hb_002685_200--Hb_002701_210 Hb_000084_240 Hb_000084_240 Hb_002685_200--Hb_000084_240 Hb_000186_200 Hb_000186_200 Hb_000179_240--Hb_000186_200 Hb_002053_130 Hb_002053_130 Hb_000179_240--Hb_002053_130 Hb_000179_240--Hb_000084_240 Hb_000925_030 Hb_000925_030 Hb_000179_240--Hb_000925_030 Hb_002205_010 Hb_002205_010 Hb_000179_240--Hb_002205_010 Hb_001235_170 Hb_001235_170 Hb_001638_030--Hb_001235_170 Hb_001638_030--Hb_000925_030 Hb_006538_130 Hb_006538_130 Hb_001638_030--Hb_006538_130 Hb_001376_010 Hb_001376_010 Hb_001638_030--Hb_001376_010 Hb_003147_060 Hb_003147_060 Hb_001638_030--Hb_003147_060 Hb_012634_020--Hb_000084_240 Hb_000445_100 Hb_000445_100 Hb_012634_020--Hb_000445_100 Hb_012634_020--Hb_002701_210 Hb_012634_020--Hb_001638_030 Hb_003224_030 Hb_003224_030 Hb_012634_020--Hb_003224_030 Hb_000069_330 Hb_000069_330 Hb_003077_050--Hb_000069_330 Hb_004117_170 Hb_004117_170 Hb_003077_050--Hb_004117_170 Hb_000077_390 Hb_000077_390 Hb_003077_050--Hb_000077_390 Hb_001484_020 Hb_001484_020 Hb_003077_050--Hb_001484_020 Hb_003077_050--Hb_000186_200 Hb_002701_210--Hb_000186_200 Hb_003078_030 Hb_003078_030 Hb_002701_210--Hb_003078_030 Hb_002701_210--Hb_000084_240 Hb_000163_230 Hb_000163_230 Hb_002701_210--Hb_000163_230 Hb_000045_260 Hb_000045_260 Hb_002701_210--Hb_000045_260 Hb_004108_240 Hb_004108_240 Hb_002701_210--Hb_004108_240 Hb_005499_010 Hb_005499_010 Hb_000084_240--Hb_005499_010 Hb_000084_240--Hb_000186_200 Hb_002897_050 Hb_002897_050 Hb_000084_240--Hb_002897_050 Hb_000084_240--Hb_000045_260 Hb_002107_060 Hb_002107_060 Hb_000084_240--Hb_002107_060 Hb_011631_010 Hb_011631_010 Hb_000084_240--Hb_011631_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.21496 19.5341 12.9137 6.96371 2.65649 2.52796
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.97084 3.83244 4.86965 1.75308 1.11828

CAGE analysis