Hb_000179_240

Information

Type -
Description -
Location Contig179: 240211-242560
Sequence    

Annotation

kegg
ID rcu:RCOM_1046290
description threonine synthase, putative (EC:4.2.3.1)
nr
ID XP_012076993.1
description PREDICTED: threonine synthase 1, chloroplastic [Jatropha curcas]
swissprot
ID Q9MT28
description Threonine synthase, chloroplastic OS=Solanum tuberosum PE=2 SV=1
trembl
ID A0A067KCL2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07448 PE=4 SV=1
Gene Ontology
ID GO:0030170
description threonine chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17296: 241085-241546
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000179_240 0.0 - - PREDICTED: threonine synthase 1, chloroplastic [Jatropha curcas]
2 Hb_002685_200 0.1095424904 - - PREDICTED: uncharacterized protein LOC105632583 [Jatropha curcas]
3 Hb_000186_200 0.1206130474 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
4 Hb_002053_130 0.1247149066 - - UDP-glucose 4-epimerase, putative [Ricinus communis]
5 Hb_000084_240 0.1362882122 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
6 Hb_000925_030 0.1389737064 - - ATP-dependent RNA helicase, putative [Ricinus communis]
7 Hb_002205_010 0.1445322137 - - hypothetical protein JCGZ_03337 [Jatropha curcas]
8 Hb_002701_210 0.1463933979 - - Protein COBRA precursor, putative [Ricinus communis]
9 Hb_171900_020 0.1471044959 - - PREDICTED: uncharacterized protein LOC105643207 [Jatropha curcas]
10 Hb_001235_170 0.1506307549 - - PREDICTED: putative glucuronosyltransferase PGSIP8 [Jatropha curcas]
11 Hb_000634_070 0.1506417124 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
12 Hb_001123_200 0.1511392037 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003077_050 0.1550854977 - - PREDICTED: probable protein phosphatase 2C 63 [Jatropha curcas]
14 Hb_006909_060 0.1558263017 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Solanum lycopersicum]
15 Hb_004965_050 0.1563194501 - - PREDICTED: uncharacterized protein LOC105645055 [Jatropha curcas]
16 Hb_003097_100 0.158000071 - - probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic [Jatropha curcas]
17 Hb_000483_040 0.1617553019 - - Cell division protein ftsH, putative [Ricinus communis]
18 Hb_003925_040 0.1618320543 transcription factor TF Family: C2H2 PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 [Jatropha curcas]
19 Hb_002897_050 0.1624171744 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
20 Hb_001638_030 0.1627371982 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]

Gene co-expression network

sample Hb_000179_240 Hb_000179_240 Hb_002685_200 Hb_002685_200 Hb_000179_240--Hb_002685_200 Hb_000186_200 Hb_000186_200 Hb_000179_240--Hb_000186_200 Hb_002053_130 Hb_002053_130 Hb_000179_240--Hb_002053_130 Hb_000084_240 Hb_000084_240 Hb_000179_240--Hb_000084_240 Hb_000925_030 Hb_000925_030 Hb_000179_240--Hb_000925_030 Hb_002205_010 Hb_002205_010 Hb_000179_240--Hb_002205_010 Hb_001638_030 Hb_001638_030 Hb_002685_200--Hb_001638_030 Hb_012634_020 Hb_012634_020 Hb_002685_200--Hb_012634_020 Hb_003077_050 Hb_003077_050 Hb_002685_200--Hb_003077_050 Hb_002701_210 Hb_002701_210 Hb_002685_200--Hb_002701_210 Hb_002685_200--Hb_000084_240 Hb_000186_200--Hb_002701_210 Hb_000186_200--Hb_000084_240 Hb_003078_030 Hb_003078_030 Hb_000186_200--Hb_003078_030 Hb_001009_090 Hb_001009_090 Hb_000186_200--Hb_001009_090 Hb_000045_260 Hb_000045_260 Hb_000186_200--Hb_000045_260 Hb_000163_230 Hb_000163_230 Hb_000186_200--Hb_000163_230 Hb_012107_010 Hb_012107_010 Hb_002053_130--Hb_012107_010 Hb_002639_100 Hb_002639_100 Hb_002053_130--Hb_002639_100 Hb_005496_180 Hb_005496_180 Hb_002053_130--Hb_005496_180 Hb_001944_020 Hb_001944_020 Hb_002053_130--Hb_001944_020 Hb_171900_020 Hb_171900_020 Hb_002053_130--Hb_171900_020 Hb_005499_010 Hb_005499_010 Hb_000084_240--Hb_005499_010 Hb_002897_050 Hb_002897_050 Hb_000084_240--Hb_002897_050 Hb_000084_240--Hb_000045_260 Hb_002107_060 Hb_002107_060 Hb_000084_240--Hb_002107_060 Hb_011631_010 Hb_011631_010 Hb_000084_240--Hb_011631_010 Hb_003147_060 Hb_003147_060 Hb_000925_030--Hb_003147_060 Hb_003925_040 Hb_003925_040 Hb_000925_030--Hb_003925_040 Hb_004108_240 Hb_004108_240 Hb_000925_030--Hb_004108_240 Hb_124677_040 Hb_124677_040 Hb_000925_030--Hb_124677_040 Hb_000925_030--Hb_002107_060 Hb_000925_030--Hb_001638_030 Hb_002110_240 Hb_002110_240 Hb_002205_010--Hb_002110_240 Hb_020400_040 Hb_020400_040 Hb_002205_010--Hb_020400_040 Hb_000256_130 Hb_000256_130 Hb_002205_010--Hb_000256_130 Hb_001472_130 Hb_001472_130 Hb_002205_010--Hb_001472_130 Hb_001123_200 Hb_001123_200 Hb_002205_010--Hb_001123_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.02883 21.0081 8.45222 6.10467 3.10698 3.28941
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.23802 5.43487 4.88833 2.29278 1.0266

CAGE analysis