Hb_001123_200

Information

Type -
Description -
Location Contig1123: 149999-152343
Sequence    

Annotation

kegg
ID rcu:RCOM_1437770
description hypothetical protein
nr
ID XP_002512639.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RFX0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1437770 PE=4 SV=1
Gene Ontology
ID GO:0005622
description lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001123_200 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003605_240 0.1363321663 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
3 Hb_001377_360 0.1408737323 transcription factor TF Family: ARF PREDICTED: auxin response factor 18 [Jatropha curcas]
4 Hb_000179_240 0.1511392037 - - PREDICTED: threonine synthase 1, chloroplastic [Jatropha curcas]
5 Hb_000976_280 0.155915722 - - PREDICTED: uncharacterized serine-rich protein C215.13-like [Jatropha curcas]
6 Hb_002685_200 0.159598157 - - PREDICTED: uncharacterized protein LOC105632583 [Jatropha curcas]
7 Hb_004324_300 0.1597025951 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
8 Hb_006909_060 0.1599998761 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Solanum lycopersicum]
9 Hb_007403_110 0.1604795667 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 4-like [Jatropha curcas]
10 Hb_003097_100 0.1644142125 - - probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic [Jatropha curcas]
11 Hb_000634_070 0.1644178297 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
12 Hb_000256_130 0.1665400267 - - hypothetical protein 21 [Hevea brasiliensis]
13 Hb_000210_010 0.1673731493 - - PREDICTED: probable CCR4-associated factor 1 homolog 11 [Jatropha curcas]
14 Hb_000475_040 0.1681243433 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
15 Hb_000925_030 0.1703912439 - - ATP-dependent RNA helicase, putative [Ricinus communis]
16 Hb_174829_020 0.1746952857 transcription factor TF Family: C2C2-Dof cyclic dof factor 2 [Jatropha curcas]
17 Hb_000291_030 0.1749856111 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Eucalyptus grandis]
18 Hb_171900_020 0.175078921 - - PREDICTED: uncharacterized protein LOC105643207 [Jatropha curcas]
19 Hb_002205_010 0.1750974669 - - hypothetical protein JCGZ_03337 [Jatropha curcas]
20 Hb_011631_010 0.1760776411 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]

Gene co-expression network

sample Hb_001123_200 Hb_001123_200 Hb_003605_240 Hb_003605_240 Hb_001123_200--Hb_003605_240 Hb_001377_360 Hb_001377_360 Hb_001123_200--Hb_001377_360 Hb_000179_240 Hb_000179_240 Hb_001123_200--Hb_000179_240 Hb_000976_280 Hb_000976_280 Hb_001123_200--Hb_000976_280 Hb_002685_200 Hb_002685_200 Hb_001123_200--Hb_002685_200 Hb_004324_300 Hb_004324_300 Hb_001123_200--Hb_004324_300 Hb_002701_220 Hb_002701_220 Hb_003605_240--Hb_002701_220 Hb_003605_240--Hb_000976_280 Hb_000364_040 Hb_000364_040 Hb_003605_240--Hb_000364_040 Hb_006909_060 Hb_006909_060 Hb_003605_240--Hb_006909_060 Hb_005496_180 Hb_005496_180 Hb_003605_240--Hb_005496_180 Hb_007403_110 Hb_007403_110 Hb_001377_360--Hb_007403_110 Hb_004724_220 Hb_004724_220 Hb_001377_360--Hb_004724_220 Hb_000291_030 Hb_000291_030 Hb_001377_360--Hb_000291_030 Hb_001477_070 Hb_001477_070 Hb_001377_360--Hb_001477_070 Hb_004635_030 Hb_004635_030 Hb_001377_360--Hb_004635_030 Hb_002228_110 Hb_002228_110 Hb_001377_360--Hb_002228_110 Hb_000179_240--Hb_002685_200 Hb_000186_200 Hb_000186_200 Hb_000179_240--Hb_000186_200 Hb_002053_130 Hb_002053_130 Hb_000179_240--Hb_002053_130 Hb_000084_240 Hb_000084_240 Hb_000179_240--Hb_000084_240 Hb_000925_030 Hb_000925_030 Hb_000179_240--Hb_000925_030 Hb_002205_010 Hb_002205_010 Hb_000179_240--Hb_002205_010 Hb_000019_040 Hb_000019_040 Hb_000976_280--Hb_000019_040 Hb_001484_020 Hb_001484_020 Hb_000976_280--Hb_001484_020 Hb_006788_140 Hb_006788_140 Hb_000976_280--Hb_006788_140 Hb_013241_010 Hb_013241_010 Hb_000976_280--Hb_013241_010 Hb_000077_390 Hb_000077_390 Hb_000976_280--Hb_000077_390 Hb_001638_030 Hb_001638_030 Hb_002685_200--Hb_001638_030 Hb_012634_020 Hb_012634_020 Hb_002685_200--Hb_012634_020 Hb_003077_050 Hb_003077_050 Hb_002685_200--Hb_003077_050 Hb_002701_210 Hb_002701_210 Hb_002685_200--Hb_002701_210 Hb_002685_200--Hb_000084_240 Hb_000856_380 Hb_000856_380 Hb_004324_300--Hb_000856_380 Hb_003020_270 Hb_003020_270 Hb_004324_300--Hb_003020_270 Hb_007943_050 Hb_007943_050 Hb_004324_300--Hb_007943_050 Hb_002234_100 Hb_002234_100 Hb_004324_300--Hb_002234_100 Hb_000210_010 Hb_000210_010 Hb_004324_300--Hb_000210_010 Hb_000010_240 Hb_000010_240 Hb_004324_300--Hb_000010_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.9944 123.168 67.9339 21.7107 18.1617 10.8048
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.9478 62.118 37.6768 15.4151 10.1022

CAGE analysis