Hb_004324_300

Information

Type -
Description -
Location Contig4324: 198403-200975
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa012628mg
description hypothetical protein
nr
ID XP_007218529.1
description hypothetical protein PRUPE_ppa012628mg [Prunus persica]
swissprot
ID P35132
description SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1
trembl
ID M5XDZ1
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012628mg PE=3 SV=1
Gene Ontology
ID GO:0005622
description ubiquitin-conjugating enzyme e2 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42332: 198433-200876 , PASA_asmbl_42333: 198433-200818 , PASA_asmbl_42334: 198869-199196
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004324_300 0.0 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
2 Hb_000856_380 0.1038387388 - - ubiquitin-conjugating enzyme [Medicago truncatula]
3 Hb_003020_270 0.1143399909 - - PREDICTED: ras-related protein Rab2BV [Jatropha curcas]
4 Hb_007943_050 0.1181901673 - - peroxiredoxin, putative [Ricinus communis]
5 Hb_002234_100 0.1190641422 - - F-box family protein, putative isoform 1 [Theobroma cacao]
6 Hb_000210_010 0.1248039908 - - PREDICTED: probable CCR4-associated factor 1 homolog 11 [Jatropha curcas]
7 Hb_000010_240 0.1253456638 - - Protein bem46, putative [Ricinus communis]
8 Hb_000878_070 0.1272540083 - - hypothetical protein POPTR_0016s06670g [Populus trichocarpa]
9 Hb_012762_030 0.1287277458 - - PREDICTED: uncharacterized protein LOC105634062 [Jatropha curcas]
10 Hb_000179_070 0.1296484205 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
11 Hb_095296_010 0.1298562033 - - PREDICTED: syntaxin-32 [Jatropha curcas]
12 Hb_001377_360 0.1329940623 transcription factor TF Family: ARF PREDICTED: auxin response factor 18 [Jatropha curcas]
13 Hb_001856_200 0.1336948888 - - Esterase PIR7B, putative [Ricinus communis]
14 Hb_180424_010 0.1338803533 - - Charged multivesicular body protein, putative [Ricinus communis]
15 Hb_000164_020 0.1346610807 - - actin binding protein, putative [Ricinus communis]
16 Hb_000983_090 0.1348649699 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
17 Hb_000407_040 0.1357020884 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
18 Hb_000805_110 0.1363197513 - - PREDICTED: uncharacterized protein C24B11.05 [Jatropha curcas]
19 Hb_002217_020 0.1396802171 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
20 Hb_005867_090 0.1402262098 - - PREDICTED: uncharacterized protein LOC105630712 [Jatropha curcas]

Gene co-expression network

sample Hb_004324_300 Hb_004324_300 Hb_000856_380 Hb_000856_380 Hb_004324_300--Hb_000856_380 Hb_003020_270 Hb_003020_270 Hb_004324_300--Hb_003020_270 Hb_007943_050 Hb_007943_050 Hb_004324_300--Hb_007943_050 Hb_002234_100 Hb_002234_100 Hb_004324_300--Hb_002234_100 Hb_000210_010 Hb_000210_010 Hb_004324_300--Hb_000210_010 Hb_000010_240 Hb_000010_240 Hb_004324_300--Hb_000010_240 Hb_000856_380--Hb_002234_100 Hb_001437_150 Hb_001437_150 Hb_000856_380--Hb_001437_150 Hb_180424_010 Hb_180424_010 Hb_000856_380--Hb_180424_010 Hb_000868_110 Hb_000868_110 Hb_000856_380--Hb_000868_110 Hb_000367_160 Hb_000367_160 Hb_000856_380--Hb_000367_160 Hb_010560_020 Hb_010560_020 Hb_000856_380--Hb_010560_020 Hb_095296_010 Hb_095296_010 Hb_003020_270--Hb_095296_010 Hb_006816_350 Hb_006816_350 Hb_003020_270--Hb_006816_350 Hb_000179_070 Hb_000179_070 Hb_003020_270--Hb_000179_070 Hb_003020_270--Hb_000868_110 Hb_002553_040 Hb_002553_040 Hb_003020_270--Hb_002553_040 Hb_000696_090 Hb_000696_090 Hb_003020_270--Hb_000696_090 Hb_000045_300 Hb_000045_300 Hb_007943_050--Hb_000045_300 Hb_009545_090 Hb_009545_090 Hb_007943_050--Hb_009545_090 Hb_005306_190 Hb_005306_190 Hb_007943_050--Hb_005306_190 Hb_007943_050--Hb_000210_010 Hb_007943_050--Hb_095296_010 Hb_010519_040 Hb_010519_040 Hb_007943_050--Hb_010519_040 Hb_012389_020 Hb_012389_020 Hb_002234_100--Hb_012389_020 Hb_004586_140 Hb_004586_140 Hb_002234_100--Hb_004586_140 Hb_003125_200 Hb_003125_200 Hb_002234_100--Hb_003125_200 Hb_003747_220 Hb_003747_220 Hb_002234_100--Hb_003747_220 Hb_002234_100--Hb_010560_020 Hb_000649_130 Hb_000649_130 Hb_000210_010--Hb_000649_130 Hb_006909_060 Hb_006909_060 Hb_000210_010--Hb_006909_060 Hb_001856_200 Hb_001856_200 Hb_000210_010--Hb_001856_200 Hb_000342_060 Hb_000342_060 Hb_000210_010--Hb_000342_060 Hb_000164_020 Hb_000164_020 Hb_000210_010--Hb_000164_020 Hb_000407_040 Hb_000407_040 Hb_000010_240--Hb_000407_040 Hb_005488_140 Hb_005488_140 Hb_000010_240--Hb_005488_140 Hb_004800_250 Hb_004800_250 Hb_000010_240--Hb_004800_250 Hb_000059_340 Hb_000059_340 Hb_000010_240--Hb_000059_340 Hb_000061_470 Hb_000061_470 Hb_000010_240--Hb_000061_470 Hb_000983_090 Hb_000983_090 Hb_000010_240--Hb_000983_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
434.964 677.473 551.646 296.872 230.453 177.293
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
393.175 577.515 507.427 129.231 113.903

CAGE analysis