Hb_003747_220

Information

Type -
Description -
Location Contig3747: 183705-190134
Sequence    

Annotation

kegg
ID egr:104453516
description syntaxin-22-like
nr
ID XP_012067395.1
description PREDICTED: syntaxin-22-like isoform X2 [Jatropha curcas]
swissprot
ID P93654
description Syntaxin-22 OS=Arabidopsis thaliana GN=SYP22 PE=1 SV=1
trembl
ID A0A067LCQ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26902 PE=4 SV=1
Gene Ontology
ID GO:0016020
description syntaxin-22-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38229: 183750-189137
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003747_220 0.0 - - PREDICTED: syntaxin-22-like isoform X2 [Jatropha curcas]
2 Hb_000252_150 0.0812662 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001143_130 0.085029721 - - peroxidase 2 [Hevea brasiliensis]
4 Hb_000635_180 0.0925331838 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
5 Hb_000462_130 0.0928181125 - - hypothetical protein CICLE_v10009355mg [Citrus clementina]
6 Hb_000179_070 0.0938569642 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
7 Hb_004586_140 0.0949746964 - - PREDICTED: uncharacterized protein LOC105630689 [Jatropha curcas]
8 Hb_001534_050 0.0963957785 - - PREDICTED: uncharacterized protein LOC105642299 [Jatropha curcas]
9 Hb_030736_080 0.0994933768 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002234_100 0.1023535476 - - F-box family protein, putative isoform 1 [Theobroma cacao]
11 Hb_000120_330 0.1044621974 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000905_060 0.1086689563 - - protein with unknown function [Ricinus communis]
13 Hb_007590_050 0.1091711491 - - NudC domain-containing protein, putative [Ricinus communis]
14 Hb_005653_060 0.1103687173 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 3 [Jatropha curcas]
15 Hb_010560_020 0.1109721764 - - PREDICTED: uncharacterized protein LOC105649267 [Jatropha curcas]
16 Hb_005941_040 0.1115916641 - - PREDICTED: CASP-like protein 5A2 [Jatropha curcas]
17 Hb_002245_030 0.1123700477 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
18 Hb_003125_200 0.1135460857 - - PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]
19 Hb_000220_040 0.1143668308 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006816_350 0.1158744338 - - PREDICTED: syntaxin-43 [Jatropha curcas]

Gene co-expression network

sample Hb_003747_220 Hb_003747_220 Hb_000252_150 Hb_000252_150 Hb_003747_220--Hb_000252_150 Hb_001143_130 Hb_001143_130 Hb_003747_220--Hb_001143_130 Hb_000635_180 Hb_000635_180 Hb_003747_220--Hb_000635_180 Hb_000462_130 Hb_000462_130 Hb_003747_220--Hb_000462_130 Hb_000179_070 Hb_000179_070 Hb_003747_220--Hb_000179_070 Hb_004586_140 Hb_004586_140 Hb_003747_220--Hb_004586_140 Hb_000252_150--Hb_001143_130 Hb_000529_020 Hb_000529_020 Hb_000252_150--Hb_000529_020 Hb_007590_050 Hb_007590_050 Hb_000252_150--Hb_007590_050 Hb_000252_150--Hb_000179_070 Hb_005928_110 Hb_005928_110 Hb_000252_150--Hb_005928_110 Hb_001143_130--Hb_007590_050 Hb_000905_060 Hb_000905_060 Hb_001143_130--Hb_000905_060 Hb_000120_330 Hb_000120_330 Hb_001143_130--Hb_000120_330 Hb_024071_020 Hb_024071_020 Hb_001143_130--Hb_024071_020 Hb_002284_010 Hb_002284_010 Hb_000635_180--Hb_002284_010 Hb_002301_140 Hb_002301_140 Hb_000635_180--Hb_002301_140 Hb_028995_040 Hb_028995_040 Hb_000635_180--Hb_028995_040 Hb_005941_040 Hb_005941_040 Hb_000635_180--Hb_005941_040 Hb_030736_080 Hb_030736_080 Hb_000635_180--Hb_030736_080 Hb_001235_190 Hb_001235_190 Hb_000635_180--Hb_001235_190 Hb_001534_050 Hb_001534_050 Hb_000462_130--Hb_001534_050 Hb_004453_170 Hb_004453_170 Hb_000462_130--Hb_004453_170 Hb_001832_060 Hb_001832_060 Hb_000462_130--Hb_001832_060 Hb_000462_130--Hb_028995_040 Hb_000698_030 Hb_000698_030 Hb_000462_130--Hb_000698_030 Hb_003078_040 Hb_003078_040 Hb_000462_130--Hb_003078_040 Hb_000179_070--Hb_004586_140 Hb_006816_350 Hb_006816_350 Hb_000179_070--Hb_006816_350 Hb_003020_270 Hb_003020_270 Hb_000179_070--Hb_003020_270 Hb_000661_290 Hb_000661_290 Hb_000179_070--Hb_000661_290 Hb_095296_010 Hb_095296_010 Hb_000179_070--Hb_095296_010 Hb_000696_090 Hb_000696_090 Hb_000179_070--Hb_000696_090 Hb_012389_020 Hb_012389_020 Hb_004586_140--Hb_012389_020 Hb_000302_270 Hb_000302_270 Hb_004586_140--Hb_000302_270 Hb_000061_470 Hb_000061_470 Hb_004586_140--Hb_000061_470 Hb_000308_030 Hb_000308_030 Hb_004586_140--Hb_000308_030 Hb_000521_320 Hb_000521_320 Hb_004586_140--Hb_000521_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.9513 35.9512 25.2363 25.1399 25.5138 28.5186
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.9446 47.9733 27.6355 12.5655 4.93208

CAGE analysis