Hb_000120_330

Information

Type -
Description -
Location Contig120: 234123-235734
Sequence    

Annotation

kegg
ID rcu:RCOM_0613720
description hypothetical protein
nr
ID XP_002528536.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SRB7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0613720 PE=4 SV=1
Gene Ontology
ID GO:0000166
description lectin-domain containing receptor kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06111: 234550-235963 , PASA_asmbl_06112: 234724-234974
cDNA
(Sanger)
(ID:Location)		 052_M14.ab1: 234557-235662

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_330 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001437_080 0.0904066583 transcription factor TF Family: TCP hypothetical protein JCGZ_05472 [Jatropha curcas]
3 Hb_002813_040 0.0904672945 - - PREDICTED: PRA1 family protein G2 [Jatropha curcas]
4 Hb_004032_360 0.0910212139 - - PREDICTED: uncharacterized protein LOC103403885 [Malus domestica]
5 Hb_001143_130 0.0930534784 - - peroxidase 2 [Hevea brasiliensis]
6 Hb_003125_200 0.0949862867 - - PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]
7 Hb_015279_010 0.0952010308 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
8 Hb_002256_030 0.0964959152 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000649_320 0.096622269 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
10 Hb_007590_050 0.0967102352 - - NudC domain-containing protein, putative [Ricinus communis]
11 Hb_000395_290 0.0967263241 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-8 [Jatropha curcas]
12 Hb_005306_190 0.0970139876 - - Mitochondrial import inner membrane translocase subunit tim23, putative [Ricinus communis]
13 Hb_002234_140 0.0972867137 - - DNA-directed RNA polymerase II family protein [Populus trichocarpa]
14 Hb_027472_040 0.099173533 - - SKP1 [Hevea brasiliensis]
15 Hb_030736_080 0.0997417619 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000905_060 0.1022038448 - - protein with unknown function [Ricinus communis]
17 Hb_003581_070 0.1027986323 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Malus domestica]
18 Hb_002234_100 0.1030818485 - - F-box family protein, putative isoform 1 [Theobroma cacao]
19 Hb_022425_040 0.1034542805 - - PREDICTED: probable RNA methyltransferase At5g51130 [Jatropha curcas]
20 Hb_003747_220 0.1044621974 - - PREDICTED: syntaxin-22-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000120_330 Hb_000120_330 Hb_001437_080 Hb_001437_080 Hb_000120_330--Hb_001437_080 Hb_002813_040 Hb_002813_040 Hb_000120_330--Hb_002813_040 Hb_004032_360 Hb_004032_360 Hb_000120_330--Hb_004032_360 Hb_001143_130 Hb_001143_130 Hb_000120_330--Hb_001143_130 Hb_003125_200 Hb_003125_200 Hb_000120_330--Hb_003125_200 Hb_015279_010 Hb_015279_010 Hb_000120_330--Hb_015279_010 Hb_005116_060 Hb_005116_060 Hb_001437_080--Hb_005116_060 Hb_002234_100 Hb_002234_100 Hb_001437_080--Hb_002234_100 Hb_001030_020 Hb_001030_020 Hb_001437_080--Hb_001030_020 Hb_000856_380 Hb_000856_380 Hb_001437_080--Hb_000856_380 Hb_005306_190 Hb_005306_190 Hb_001437_080--Hb_005306_190 Hb_001488_070 Hb_001488_070 Hb_002813_040--Hb_001488_070 Hb_003581_070 Hb_003581_070 Hb_002813_040--Hb_003581_070 Hb_029866_090 Hb_029866_090 Hb_002813_040--Hb_029866_090 Hb_031527_040 Hb_031527_040 Hb_002813_040--Hb_031527_040 Hb_002256_030 Hb_002256_030 Hb_002813_040--Hb_002256_030 Hb_020956_020 Hb_020956_020 Hb_002813_040--Hb_020956_020 Hb_004032_360--Hb_002256_030 Hb_027380_050 Hb_027380_050 Hb_004032_360--Hb_027380_050 Hb_001246_110 Hb_001246_110 Hb_004032_360--Hb_001246_110 Hb_000056_240 Hb_000056_240 Hb_004032_360--Hb_000056_240 Hb_004032_360--Hb_001030_020 Hb_003747_220 Hb_003747_220 Hb_001143_130--Hb_003747_220 Hb_007590_050 Hb_007590_050 Hb_001143_130--Hb_007590_050 Hb_000252_150 Hb_000252_150 Hb_001143_130--Hb_000252_150 Hb_000905_060 Hb_000905_060 Hb_001143_130--Hb_000905_060 Hb_024071_020 Hb_024071_020 Hb_001143_130--Hb_024071_020 Hb_000465_460 Hb_000465_460 Hb_003125_200--Hb_000465_460 Hb_001758_100 Hb_001758_100 Hb_003125_200--Hb_001758_100 Hb_004931_070 Hb_004931_070 Hb_003125_200--Hb_004931_070 Hb_012389_020 Hb_012389_020 Hb_003125_200--Hb_012389_020 Hb_027472_040 Hb_027472_040 Hb_003125_200--Hb_027472_040 Hb_029388_020 Hb_029388_020 Hb_003125_200--Hb_029388_020 Hb_022425_040 Hb_022425_040 Hb_015279_010--Hb_022425_040 Hb_003787_010 Hb_003787_010 Hb_015279_010--Hb_003787_010 Hb_000667_070 Hb_000667_070 Hb_015279_010--Hb_000667_070 Hb_004116_190 Hb_004116_190 Hb_015279_010--Hb_004116_190 Hb_000920_110 Hb_000920_110 Hb_015279_010--Hb_000920_110 Hb_011671_100 Hb_011671_100 Hb_015279_010--Hb_011671_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.7077 52.0333 27.8601 31.5678 32.4932 34.2621
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.799 81.6101 32.129 19.8216 17.2699

CAGE analysis