Hb_020400_040

Information

Type -
Description -
Location Contig20400: 21850-22452
Sequence    

Annotation

kegg
ID rcu:RCOM_0340250
description zinc finger protein, putative
nr
ID XP_012084713.1
description PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Jatropha curcas]
swissprot
ID Q8LPN7
description E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1
trembl
ID A0A067JWG7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19857 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase ring1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20921: 21869-22544
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020400_040 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Jatropha curcas]
2 Hb_002205_010 0.1221242064 - - hypothetical protein JCGZ_03337 [Jatropha curcas]
3 Hb_006096_010 0.1617175571 - - conserved hypothetical protein [Ricinus communis]
4 Hb_012760_010 0.1668574136 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic [Jatropha curcas]
5 Hb_002110_240 0.1707302415 - - clathrin assembly protein, putative [Ricinus communis]
6 Hb_156850_080 0.1768311557 - - PREDICTED: uncharacterized protein LOC105635247 [Jatropha curcas]
7 Hb_001123_200 0.1820089829 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000179_240 0.1923840003 - - PREDICTED: threonine synthase 1, chloroplastic [Jatropha curcas]
9 Hb_000634_070 0.1965233126 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
10 Hb_000256_130 0.1966142946 - - hypothetical protein 21 [Hevea brasiliensis]
11 Hb_001546_110 0.1970722505 - - PREDICTED: leucine-rich repeat extensin-like protein 3 [Jatropha curcas]
12 Hb_022693_050 0.2005429182 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
13 Hb_003078_050 0.2007690145 - - PREDICTED: serine/threonine-protein kinase OXI1 [Jatropha curcas]
14 Hb_000086_340 0.201721906 - - PREDICTED: uncharacterized protein LOC100253191 [Vitis vinifera]
15 Hb_002572_050 0.2130965293 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
16 Hb_000056_170 0.2142885206 - - conserved hypothetical protein [Ricinus communis]
17 Hb_009838_060 0.2157850522 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003120_050 0.2159070973 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
19 Hb_000072_330 0.2186568116 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000483_040 0.2195517246 - - Cell division protein ftsH, putative [Ricinus communis]

Gene co-expression network

sample Hb_020400_040 Hb_020400_040 Hb_002205_010 Hb_002205_010 Hb_020400_040--Hb_002205_010 Hb_006096_010 Hb_006096_010 Hb_020400_040--Hb_006096_010 Hb_012760_010 Hb_012760_010 Hb_020400_040--Hb_012760_010 Hb_002110_240 Hb_002110_240 Hb_020400_040--Hb_002110_240 Hb_156850_080 Hb_156850_080 Hb_020400_040--Hb_156850_080 Hb_001123_200 Hb_001123_200 Hb_020400_040--Hb_001123_200 Hb_002205_010--Hb_002110_240 Hb_000179_240 Hb_000179_240 Hb_002205_010--Hb_000179_240 Hb_000256_130 Hb_000256_130 Hb_002205_010--Hb_000256_130 Hb_001472_130 Hb_001472_130 Hb_002205_010--Hb_001472_130 Hb_002205_010--Hb_001123_200 Hb_002272_010 Hb_002272_010 Hb_006096_010--Hb_002272_010 Hb_006096_010--Hb_002110_240 Hb_006096_010--Hb_002205_010 Hb_008864_070 Hb_008864_070 Hb_006096_010--Hb_008864_070 Hb_009233_030 Hb_009233_030 Hb_006096_010--Hb_009233_030 Hb_000483_040 Hb_000483_040 Hb_012760_010--Hb_000483_040 Hb_009838_060 Hb_009838_060 Hb_012760_010--Hb_009838_060 Hb_001546_110 Hb_001546_110 Hb_012760_010--Hb_001546_110 Hb_003078_050 Hb_003078_050 Hb_012760_010--Hb_003078_050 Hb_000069_230 Hb_000069_230 Hb_012760_010--Hb_000069_230 Hb_003494_060 Hb_003494_060 Hb_012760_010--Hb_003494_060 Hb_008173_030 Hb_008173_030 Hb_002110_240--Hb_008173_030 Hb_002110_240--Hb_000256_130 Hb_000343_180 Hb_000343_180 Hb_002110_240--Hb_000343_180 Hb_002110_240--Hb_009233_030 Hb_156850_080--Hb_002205_010 Hb_005496_070 Hb_005496_070 Hb_156850_080--Hb_005496_070 Hb_156850_080--Hb_002110_240 Hb_156850_080--Hb_001472_130 Hb_000152_860 Hb_000152_860 Hb_156850_080--Hb_000152_860 Hb_003605_240 Hb_003605_240 Hb_001123_200--Hb_003605_240 Hb_001377_360 Hb_001377_360 Hb_001123_200--Hb_001377_360 Hb_001123_200--Hb_000179_240 Hb_000976_280 Hb_000976_280 Hb_001123_200--Hb_000976_280 Hb_002685_200 Hb_002685_200 Hb_001123_200--Hb_002685_200 Hb_004324_300 Hb_004324_300 Hb_001123_200--Hb_004324_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.3253 125.499 25.6303 14.2503 11.0691 7.40151
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.2419 45.9246 11.8571 4.77964 1.83079

CAGE analysis