Hb_006096_010

Information

Type -
Description -
Location Contig6096: 28048-28311
Sequence    

Annotation

kegg
ID rcu:RCOM_1183700
description hypothetical protein
nr
ID XP_002527940.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SPM1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1183700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006096_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_020400_040 0.1617175571 - - PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Jatropha curcas]
3 Hb_002272_010 0.2047487143 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002110_240 0.2055989703 - - clathrin assembly protein, putative [Ricinus communis]
5 Hb_002205_010 0.2103832336 - - hypothetical protein JCGZ_03337 [Jatropha curcas]
6 Hb_008864_070 0.2260564983 - - PREDICTED: uncharacterized protein LOC105803851 [Gossypium raimondii]
7 Hb_009233_030 0.240494882 - - protein binding protein, putative [Ricinus communis]
8 Hb_000256_130 0.2496471332 - - hypothetical protein 21 [Hevea brasiliensis]
9 Hb_000072_330 0.2505725026 - - conserved hypothetical protein [Ricinus communis]
10 Hb_029243_010 0.2507773504 - - PREDICTED: protein LURP-one-related 15-like isoform X1 [Jatropha curcas]
11 Hb_156850_080 0.258047066 - - PREDICTED: uncharacterized protein LOC105635247 [Jatropha curcas]
12 Hb_007218_140 0.2602405716 - - hypothetical protein JCGZ_24847 [Jatropha curcas]
13 Hb_008173_030 0.2618261713 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
14 Hb_011909_140 0.2670921106 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
15 Hb_000086_340 0.2676390529 - - PREDICTED: uncharacterized protein LOC100253191 [Vitis vinifera]
16 Hb_000418_080 0.2686634277 - - PREDICTED: uncharacterized protein LOC105124652 [Populus euphratica]
17 Hb_001123_200 0.2702696636 - - conserved hypothetical protein [Ricinus communis]
18 Hb_012760_010 0.2717911972 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic [Jatropha curcas]
19 Hb_000638_210 0.2753528449 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
20 Hb_000186_210 0.2756724947 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]

Gene co-expression network

sample Hb_006096_010 Hb_006096_010 Hb_020400_040 Hb_020400_040 Hb_006096_010--Hb_020400_040 Hb_002272_010 Hb_002272_010 Hb_006096_010--Hb_002272_010 Hb_002110_240 Hb_002110_240 Hb_006096_010--Hb_002110_240 Hb_002205_010 Hb_002205_010 Hb_006096_010--Hb_002205_010 Hb_008864_070 Hb_008864_070 Hb_006096_010--Hb_008864_070 Hb_009233_030 Hb_009233_030 Hb_006096_010--Hb_009233_030 Hb_020400_040--Hb_002205_010 Hb_012760_010 Hb_012760_010 Hb_020400_040--Hb_012760_010 Hb_020400_040--Hb_002110_240 Hb_156850_080 Hb_156850_080 Hb_020400_040--Hb_156850_080 Hb_001123_200 Hb_001123_200 Hb_020400_040--Hb_001123_200 Hb_000486_070 Hb_000486_070 Hb_002272_010--Hb_000486_070 Hb_002272_010--Hb_009233_030 Hb_000256_130 Hb_000256_130 Hb_002272_010--Hb_000256_130 Hb_003225_030 Hb_003225_030 Hb_002272_010--Hb_003225_030 Hb_000649_240 Hb_000649_240 Hb_002272_010--Hb_000649_240 Hb_002110_240--Hb_002205_010 Hb_008173_030 Hb_008173_030 Hb_002110_240--Hb_008173_030 Hb_002110_240--Hb_000256_130 Hb_000343_180 Hb_000343_180 Hb_002110_240--Hb_000343_180 Hb_002110_240--Hb_009233_030 Hb_000179_240 Hb_000179_240 Hb_002205_010--Hb_000179_240 Hb_002205_010--Hb_000256_130 Hb_001472_130 Hb_001472_130 Hb_002205_010--Hb_001472_130 Hb_002205_010--Hb_001123_200 Hb_005701_030 Hb_005701_030 Hb_008864_070--Hb_005701_030 Hb_001863_440 Hb_001863_440 Hb_008864_070--Hb_001863_440 Hb_001902_150 Hb_001902_150 Hb_008864_070--Hb_001902_150 Hb_000186_210 Hb_000186_210 Hb_008864_070--Hb_000186_210 Hb_000167_020 Hb_000167_020 Hb_008864_070--Hb_000167_020 Hb_005663_070 Hb_005663_070 Hb_009233_030--Hb_005663_070 Hb_009233_030--Hb_000256_130 Hb_006909_060 Hb_006909_060 Hb_009233_030--Hb_006909_060 Hb_000008_110 Hb_000008_110 Hb_009233_030--Hb_000008_110 Hb_000023_250 Hb_000023_250 Hb_009233_030--Hb_000023_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.67516 37.901 4.12357 4.82766 2.70905 0.455147
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.1327 19.7126 2.76722 1.37342 0

CAGE analysis