Hb_003225_030

Information

Type -
Description -
Location Contig3225: 82440-84230
Sequence    

Annotation

kegg
ID rcu:RCOM_1412190
description Pectinesterase-4 precursor, putative (EC:3.1.1.11)
nr
ID XP_002528620.1
description Pectinesterase-4 precursor, putative [Ricinus communis]
swissprot
ID Q8GX86
description Probable pectinesterase/pectinesterase inhibitor 21 OS=Arabidopsis thaliana GN=PME21 PE=2 SV=2
trembl
ID B9SRK1
description Pectinesterase-4, putative OS=Ricinus communis GN=RCOM_1412190 PE=3 SV=1
Gene Ontology
ID GO:0005618
description pectinesterase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34150: 83453-83591
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003225_030 0.0 - - Pectinesterase-4 precursor, putative [Ricinus communis]
2 Hb_002272_010 0.2367955479 - - conserved hypothetical protein [Ricinus communis]
3 Hb_148891_010 0.2642276758 - - -
4 Hb_008096_040 0.2748188744 - - hypothetical protein PRUPE_ppa001351mg [Prunus persica]
5 Hb_000861_010 0.2818488057 - - -
6 Hb_133311_010 0.2946711262 - - PREDICTED: U-box domain-containing protein 62-like isoform X1 [Glycine max]
7 Hb_000612_040 0.3098331219 - - hypothetical protein OsJ_16945 [Oryza sativa Japonica Group]
8 Hb_000099_230 0.3129562309 - - PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]
9 Hb_010913_010 0.3159917744 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
10 Hb_002893_120 0.3160139735 - - PREDICTED: uncharacterized protein LOC105637692 [Jatropha curcas]
11 Hb_011689_130 0.3164211961 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 isoform X1 [Jatropha curcas]
12 Hb_000445_190 0.3165865105 - - -
13 Hb_005928_050 0.317253845 - - glutathione reductase [Hevea brasiliensis]
14 Hb_004102_030 0.319445589 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
15 Hb_001842_030 0.3196689511 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
16 Hb_069022_010 0.3204074633 - - conserved hypothetical protein [Ricinus communis]
17 Hb_084889_010 0.3240553952 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
18 Hb_006096_010 0.3247340442 - - conserved hypothetical protein [Ricinus communis]
19 Hb_012008_010 0.3276923237 - - -
20 Hb_009222_020 0.3284986329 - - hypothetical protein AALP_AA5G087000 [Arabis alpina]

Gene co-expression network

sample Hb_003225_030 Hb_003225_030 Hb_002272_010 Hb_002272_010 Hb_003225_030--Hb_002272_010 Hb_148891_010 Hb_148891_010 Hb_003225_030--Hb_148891_010 Hb_008096_040 Hb_008096_040 Hb_003225_030--Hb_008096_040 Hb_000861_010 Hb_000861_010 Hb_003225_030--Hb_000861_010 Hb_133311_010 Hb_133311_010 Hb_003225_030--Hb_133311_010 Hb_000612_040 Hb_000612_040 Hb_003225_030--Hb_000612_040 Hb_006096_010 Hb_006096_010 Hb_002272_010--Hb_006096_010 Hb_000486_070 Hb_000486_070 Hb_002272_010--Hb_000486_070 Hb_009233_030 Hb_009233_030 Hb_002272_010--Hb_009233_030 Hb_000256_130 Hb_000256_130 Hb_002272_010--Hb_000256_130 Hb_000649_240 Hb_000649_240 Hb_002272_010--Hb_000649_240 Hb_000445_190 Hb_000445_190 Hb_148891_010--Hb_000445_190 Hb_004102_030 Hb_004102_030 Hb_148891_010--Hb_004102_030 Hb_001017_080 Hb_001017_080 Hb_148891_010--Hb_001017_080 Hb_004931_010 Hb_004931_010 Hb_148891_010--Hb_004931_010 Hb_000803_040 Hb_000803_040 Hb_148891_010--Hb_000803_040 Hb_001495_060 Hb_001495_060 Hb_148891_010--Hb_001495_060 Hb_000826_060 Hb_000826_060 Hb_008096_040--Hb_000826_060 Hb_008096_040--Hb_002272_010 Hb_076038_010 Hb_076038_010 Hb_008096_040--Hb_076038_010 Hb_010913_010 Hb_010913_010 Hb_008096_040--Hb_010913_010 Hb_007181_040 Hb_007181_040 Hb_008096_040--Hb_007181_040 Hb_000088_210 Hb_000088_210 Hb_000861_010--Hb_000088_210 Hb_001519_070 Hb_001519_070 Hb_000861_010--Hb_001519_070 Hb_000516_070 Hb_000516_070 Hb_000861_010--Hb_000516_070 Hb_018599_010 Hb_018599_010 Hb_000861_010--Hb_018599_010 Hb_011689_130 Hb_011689_130 Hb_000861_010--Hb_011689_130 Hb_012135_010 Hb_012135_010 Hb_133311_010--Hb_012135_010 Hb_008667_040 Hb_008667_040 Hb_133311_010--Hb_008667_040 Hb_000179_150 Hb_000179_150 Hb_133311_010--Hb_000179_150 Hb_007333_010 Hb_007333_010 Hb_133311_010--Hb_007333_010 Hb_002045_140 Hb_002045_140 Hb_133311_010--Hb_002045_140 Hb_000264_290 Hb_000264_290 Hb_133311_010--Hb_000264_290 Hb_150930_010 Hb_150930_010 Hb_000612_040--Hb_150930_010 Hb_007553_020 Hb_007553_020 Hb_000612_040--Hb_007553_020 Hb_005144_070 Hb_005144_070 Hb_000612_040--Hb_005144_070 Hb_001449_010 Hb_001449_010 Hb_000612_040--Hb_001449_010 Hb_000923_090 Hb_000923_090 Hb_000612_040--Hb_000923_090 Hb_004871_020 Hb_004871_020 Hb_000612_040--Hb_004871_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.11282 5.36317 2.29183 1.76589 0.729187 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.177 10.0766 0.164184 0.0347017 0

CAGE analysis