Hb_000088_210

Information

Type -
Description -
Location Contig88: 277047-277247
Sequence    

Annotation

kegg
ID pop:POPTR_0013s11310g
description hypothetical protein
nr
ID XP_006376245.1
description hypothetical protein POPTR_0013s11310g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FXQ5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s11310g PE=4 SV=1
Gene Ontology
ID GO:0005840
description ribosomal l18p l5e family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61396: 276910-277310
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000088_210 0.0 - - hypothetical protein POPTR_0013s11310g [Populus trichocarpa]
2 Hb_001519_070 0.1695671028 - - hypothetical protein JCGZ_09841 [Jatropha curcas]
3 Hb_000861_010 0.2397105324 - - -
4 Hb_001427_140 0.2877097644 - - PREDICTED: probable phospholipase A2 homolog 1 [Jatropha curcas]
5 Hb_173902_040 0.2880020914 - - -
6 Hb_127008_010 0.295123818 - - PREDICTED: uncharacterized protein LOC105629501 [Jatropha curcas]
7 Hb_000099_230 0.3115837787 - - PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]
8 Hb_004931_010 0.3144213788 - - inosine triphosphate pyrophosphatase, putative [Ricinus communis]
9 Hb_000445_190 0.3168584344 - - -
10 Hb_148891_010 0.3170346453 - - -
11 Hb_004230_030 0.319937129 - - hypothetical protein CISIN_1g043871mg [Citrus sinensis]
12 Hb_011689_130 0.3251544148 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 isoform X1 [Jatropha curcas]
13 Hb_001377_400 0.3266357206 - - neutral/alkaline invertase [Manihot esculenta]
14 Hb_005736_040 0.3346315527 - - -
15 Hb_000023_200 0.3383632487 - - hypothetical protein POPTR_0018s02910g [Populus trichocarpa]
16 Hb_115326_010 0.3405637644 - - -
17 Hb_153216_010 0.3408057523 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
18 Hb_024399_030 0.3471526741 - - conserved hypothetical protein [Ricinus communis]
19 Hb_116195_010 0.348652416 - - -
20 Hb_000803_040 0.3491129692 - - -

Gene co-expression network

sample Hb_000088_210 Hb_000088_210 Hb_001519_070 Hb_001519_070 Hb_000088_210--Hb_001519_070 Hb_000861_010 Hb_000861_010 Hb_000088_210--Hb_000861_010 Hb_001427_140 Hb_001427_140 Hb_000088_210--Hb_001427_140 Hb_173902_040 Hb_173902_040 Hb_000088_210--Hb_173902_040 Hb_127008_010 Hb_127008_010 Hb_000088_210--Hb_127008_010 Hb_000099_230 Hb_000099_230 Hb_000088_210--Hb_000099_230 Hb_115326_010 Hb_115326_010 Hb_001519_070--Hb_115326_010 Hb_001519_070--Hb_000861_010 Hb_001519_070--Hb_001427_140 Hb_001519_070--Hb_173902_040 Hb_167364_020 Hb_167364_020 Hb_001519_070--Hb_167364_020 Hb_003225_030 Hb_003225_030 Hb_000861_010--Hb_003225_030 Hb_000516_070 Hb_000516_070 Hb_000861_010--Hb_000516_070 Hb_018599_010 Hb_018599_010 Hb_000861_010--Hb_018599_010 Hb_011689_130 Hb_011689_130 Hb_000861_010--Hb_011689_130 Hb_001427_140--Hb_115326_010 Hb_000282_140 Hb_000282_140 Hb_001427_140--Hb_000282_140 Hb_006588_010 Hb_006588_010 Hb_001427_140--Hb_006588_010 Hb_081207_010 Hb_081207_010 Hb_001427_140--Hb_081207_010 Hb_002228_090 Hb_002228_090 Hb_001427_140--Hb_002228_090 Hb_175450_010 Hb_175450_010 Hb_001427_140--Hb_175450_010 Hb_001493_110 Hb_001493_110 Hb_173902_040--Hb_001493_110 Hb_003702_040 Hb_003702_040 Hb_173902_040--Hb_003702_040 Hb_006096_040 Hb_006096_040 Hb_173902_040--Hb_006096_040 Hb_001519_180 Hb_001519_180 Hb_173902_040--Hb_001519_180 Hb_005545_030 Hb_005545_030 Hb_173902_040--Hb_005545_030 Hb_000789_100 Hb_000789_100 Hb_173902_040--Hb_000789_100 Hb_001504_050 Hb_001504_050 Hb_127008_010--Hb_001504_050 Hb_000144_080 Hb_000144_080 Hb_127008_010--Hb_000144_080 Hb_009486_150 Hb_009486_150 Hb_127008_010--Hb_009486_150 Hb_027760_010 Hb_027760_010 Hb_127008_010--Hb_027760_010 Hb_001377_400 Hb_001377_400 Hb_127008_010--Hb_001377_400 Hb_003371_180 Hb_003371_180 Hb_127008_010--Hb_003371_180 Hb_000099_230--Hb_127008_010 Hb_069022_010 Hb_069022_010 Hb_000099_230--Hb_069022_010 Hb_014783_010 Hb_014783_010 Hb_000099_230--Hb_014783_010 Hb_000445_190 Hb_000445_190 Hb_000099_230--Hb_000445_190 Hb_000099_230--Hb_003371_180 Hb_008667_040 Hb_008667_040 Hb_000099_230--Hb_008667_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.78862 1.24275 10.0616 0 4.913 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0156 12.7403 0 0 0

CAGE analysis