Hb_001519_180

Information

Type -
Description -
Location Contig1519: 202225-204713
Sequence    

Annotation

kegg
ID rcu:RCOM_0402510
description Squalene monooxygenase, putative (EC:1.14.99.7)
nr
ID XP_002531902.1
description Squalene monooxygenase, putative [Ricinus communis]
swissprot
ID O48651
description Squalene monooxygenase OS=Panax ginseng PE=2 SV=1
trembl
ID B9T0Y3
description Squalene monooxygenase, putative OS=Ricinus communis GN=RCOM_0402510 PE=4 SV=1
Gene Ontology
ID GO:0016021
description squalene monooxygenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001519_180 0.0 - - Squalene monooxygenase, putative [Ricinus communis]
2 Hb_000012_180 0.2267274675 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005590_030 0.2342456395 - - PREDICTED: (S)-coclaurine N-methyltransferase [Jatropha curcas]
4 Hb_003018_110 0.2446394521 - - -
5 Hb_012867_010 0.2467528997 - - Vacuolar protein sorting 45 [Theobroma cacao]
6 Hb_024505_020 0.247396814 - - PREDICTED: probable receptor-like protein kinase At1g80640 [Jatropha curcas]
7 Hb_003849_080 0.2474515258 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_011161_070 0.2565561676 - - PREDICTED: kynurenine--oxoglutarate transaminase 1-like isoform X1 [Populus euphratica]
9 Hb_005545_030 0.2612632914 - - PREDICTED: uncharacterized protein LOC105645697 [Jatropha curcas]
10 Hb_000933_050 0.2649730562 - - protein binding protein, putative [Ricinus communis]
11 Hb_173902_040 0.2663741256 - - -
12 Hb_000326_070 0.2674211853 - - phenylalanyl-tRNA synthetase beta chain, putative [Ricinus communis]
13 Hb_000307_170 0.2693943696 - - PREDICTED: uncharacterized protein LOC105638528 [Jatropha curcas]
14 Hb_004048_140 0.2708491444 - - -
15 Hb_001951_260 0.2716848745 - - 60S ribosomal protein L32, putative [Ricinus communis]
16 Hb_000108_100 0.2762194668 - - PREDICTED: DNA polymerase epsilon subunit 2 isoform X2 [Jatropha curcas]
17 Hb_004241_040 0.2763695156 - - -
18 Hb_025236_040 0.2769614475 - - conserved hypothetical protein [Ricinus communis]
19 Hb_136765_010 0.2783891727 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X2 [Jatropha curcas]
20 Hb_001565_100 0.278480328 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_001519_180 Hb_001519_180 Hb_000012_180 Hb_000012_180 Hb_001519_180--Hb_000012_180 Hb_005590_030 Hb_005590_030 Hb_001519_180--Hb_005590_030 Hb_003018_110 Hb_003018_110 Hb_001519_180--Hb_003018_110 Hb_012867_010 Hb_012867_010 Hb_001519_180--Hb_012867_010 Hb_024505_020 Hb_024505_020 Hb_001519_180--Hb_024505_020 Hb_003849_080 Hb_003849_080 Hb_001519_180--Hb_003849_080 Hb_001565_100 Hb_001565_100 Hb_000012_180--Hb_001565_100 Hb_073973_170 Hb_073973_170 Hb_000012_180--Hb_073973_170 Hb_074683_020 Hb_074683_020 Hb_000012_180--Hb_074683_020 Hb_003813_200 Hb_003813_200 Hb_000012_180--Hb_003813_200 Hb_000038_130 Hb_000038_130 Hb_000012_180--Hb_000038_130 Hb_000307_170 Hb_000307_170 Hb_000012_180--Hb_000307_170 Hb_001178_020 Hb_001178_020 Hb_005590_030--Hb_001178_020 Hb_002851_060 Hb_002851_060 Hb_005590_030--Hb_002851_060 Hb_178345_010 Hb_178345_010 Hb_005590_030--Hb_178345_010 Hb_000641_030 Hb_000641_030 Hb_005590_030--Hb_000641_030 Hb_001195_590 Hb_001195_590 Hb_005590_030--Hb_001195_590 Hb_005217_020 Hb_005217_020 Hb_005590_030--Hb_005217_020 Hb_005545_030 Hb_005545_030 Hb_003018_110--Hb_005545_030 Hb_002681_040 Hb_002681_040 Hb_003018_110--Hb_002681_040 Hb_000680_150 Hb_000680_150 Hb_003018_110--Hb_000680_150 Hb_003018_110--Hb_073973_170 Hb_004046_040 Hb_004046_040 Hb_003018_110--Hb_004046_040 Hb_002918_280 Hb_002918_280 Hb_003018_110--Hb_002918_280 Hb_136765_010 Hb_136765_010 Hb_012867_010--Hb_136765_010 Hb_002141_020 Hb_002141_020 Hb_012867_010--Hb_002141_020 Hb_089889_020 Hb_089889_020 Hb_012867_010--Hb_089889_020 Hb_107847_010 Hb_107847_010 Hb_012867_010--Hb_107847_010 Hb_068922_010 Hb_068922_010 Hb_012867_010--Hb_068922_010 Hb_125861_010 Hb_125861_010 Hb_012867_010--Hb_125861_010 Hb_000789_100 Hb_000789_100 Hb_024505_020--Hb_000789_100 Hb_010968_010 Hb_010968_010 Hb_024505_020--Hb_010968_010 Hb_000670_020 Hb_000670_020 Hb_024505_020--Hb_000670_020 Hb_001951_260 Hb_001951_260 Hb_024505_020--Hb_001951_260 Hb_002450_040 Hb_002450_040 Hb_024505_020--Hb_002450_040 Hb_025236_040 Hb_025236_040 Hb_024505_020--Hb_025236_040 Hb_171554_090 Hb_171554_090 Hb_003849_080--Hb_171554_090 Hb_175612_010 Hb_175612_010 Hb_003849_080--Hb_175612_010 Hb_004525_100 Hb_004525_100 Hb_003849_080--Hb_004525_100 Hb_009801_010 Hb_009801_010 Hb_003849_080--Hb_009801_010 Hb_004241_040 Hb_004241_040 Hb_003849_080--Hb_004241_040 Hb_006261_040 Hb_006261_040 Hb_003849_080--Hb_006261_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.093451 0 0.0483994 0.0162056 0.0625087 0.0548571
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0475382 0.0747808 0 0 0

CAGE analysis