Hb_001195_590

Information

Type -
Description -
Location Contig1195: 389599-392092
Sequence    

Annotation

kegg
ID pop:POPTR_0014s04120g
description hypothetical protein
nr
ID XP_012071789.1
description PREDICTED: uncharacterized protein LOC105633753 [Jatropha curcas]
swissprot
ID P05100
description DNA-3-methyladenine glycosylase 1 OS=Escherichia coli (strain K12) GN=tag PE=1 SV=1
trembl
ID A0A067L1V7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04395 PE=4 SV=1
Gene Ontology
ID GO:0003824
description glutamine amidotransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05858: 389417-389681
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_590 0.0 - - PREDICTED: uncharacterized protein LOC105633753 [Jatropha curcas]
2 Hb_001741_050 0.1669842822 - - -
3 Hb_000088_060 0.1879204403 - - -
4 Hb_005590_030 0.1892454062 - - PREDICTED: (S)-coclaurine N-methyltransferase [Jatropha curcas]
5 Hb_001195_580 0.1967354139 - - hypothetical protein POPTR_0014s04130g [Populus trichocarpa]
6 Hb_006557_010 0.2027614031 - - -
7 Hb_089140_080 0.2074745658 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105637962 isoform X1 [Jatropha curcas]
8 Hb_178345_010 0.212401288 - - hypothetical protein PHAVU_004G084200g [Phaseolus vulgaris]
9 Hb_006452_190 0.2167397833 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
10 Hb_145761_010 0.2198042519 - - -
11 Hb_000525_040 0.2213288649 - - -
12 Hb_004657_010 0.2276157217 - - PREDICTED: uncharacterized protein LOC105639764 [Jatropha curcas]
13 Hb_003913_100 0.2296695649 - - copper amine oxidase, putative [Ricinus communis]
14 Hb_000352_150 0.2318600306 - - hypothetical protein JCGZ_11641 [Jatropha curcas]
15 Hb_001454_390 0.2328029716 - - 8-kd dynein light chain, DLC8, pin [Thalassiosira pseudonana CCMP1335]
16 Hb_002851_060 0.2346175954 - - Clathrin light chain 2 -like protein [Gossypium arboreum]
17 Hb_001178_020 0.2352478301 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 3 [Jatropha curcas]
18 Hb_001635_220 0.2366022077 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
19 Hb_002835_190 0.2373360197 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
20 Hb_000221_100 0.2400240696 - - hypothetical protein POPTR_0006s07000g [Populus trichocarpa]

Gene co-expression network

sample Hb_001195_590 Hb_001195_590 Hb_001741_050 Hb_001741_050 Hb_001195_590--Hb_001741_050 Hb_000088_060 Hb_000088_060 Hb_001195_590--Hb_000088_060 Hb_005590_030 Hb_005590_030 Hb_001195_590--Hb_005590_030 Hb_001195_580 Hb_001195_580 Hb_001195_590--Hb_001195_580 Hb_006557_010 Hb_006557_010 Hb_001195_590--Hb_006557_010 Hb_089140_080 Hb_089140_080 Hb_001195_590--Hb_089140_080 Hb_000329_530 Hb_000329_530 Hb_001741_050--Hb_000329_530 Hb_178345_010 Hb_178345_010 Hb_001741_050--Hb_178345_010 Hb_004449_010 Hb_004449_010 Hb_001741_050--Hb_004449_010 Hb_012395_100 Hb_012395_100 Hb_001741_050--Hb_012395_100 Hb_000046_020 Hb_000046_020 Hb_001741_050--Hb_000046_020 Hb_000088_060--Hb_006557_010 Hb_006735_040 Hb_006735_040 Hb_000088_060--Hb_006735_040 Hb_080083_010 Hb_080083_010 Hb_000088_060--Hb_080083_010 Hb_004092_010 Hb_004092_010 Hb_000088_060--Hb_004092_010 Hb_005057_010 Hb_005057_010 Hb_000088_060--Hb_005057_010 Hb_001178_020 Hb_001178_020 Hb_005590_030--Hb_001178_020 Hb_002851_060 Hb_002851_060 Hb_005590_030--Hb_002851_060 Hb_005590_030--Hb_178345_010 Hb_000641_030 Hb_000641_030 Hb_005590_030--Hb_000641_030 Hb_005217_020 Hb_005217_020 Hb_005590_030--Hb_005217_020 Hb_000373_290 Hb_000373_290 Hb_001195_580--Hb_000373_290 Hb_001195_580--Hb_000641_030 Hb_002863_010 Hb_002863_010 Hb_001195_580--Hb_002863_010 Hb_000376_110 Hb_000376_110 Hb_001195_580--Hb_000376_110 Hb_004724_430 Hb_004724_430 Hb_001195_580--Hb_004724_430 Hb_004657_010 Hb_004657_010 Hb_006557_010--Hb_004657_010 Hb_005496_060 Hb_005496_060 Hb_006557_010--Hb_005496_060 Hb_000329_620 Hb_000329_620 Hb_006557_010--Hb_000329_620 Hb_006557_010--Hb_004449_010 Hb_002835_190 Hb_002835_190 Hb_006557_010--Hb_002835_190 Hb_000352_150 Hb_000352_150 Hb_006557_010--Hb_000352_150 Hb_002728_020 Hb_002728_020 Hb_089140_080--Hb_002728_020 Hb_000500_290 Hb_000500_290 Hb_089140_080--Hb_000500_290 Hb_001348_140 Hb_001348_140 Hb_089140_080--Hb_001348_140 Hb_011537_040 Hb_011537_040 Hb_089140_080--Hb_011537_040 Hb_000188_190 Hb_000188_190 Hb_089140_080--Hb_000188_190 Hb_003913_100 Hb_003913_100 Hb_089140_080--Hb_003913_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.8401 1.80346 1.1141 0.641459 29.666 12.86
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.992 9.31615 0 0 0

CAGE analysis