Hb_006735_040

Information

Type -
Description -
Location Contig6735: 25627-42941
Sequence    

Annotation

kegg
ID pop:POPTR_0019s09920g
description POPTRDRAFT_914296; hypothetical protein
nr
ID CBI40547.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q93ZR6
description O-acyltransferase WSD1 OS=Arabidopsis thaliana GN=WSD1 PE=2 SV=1
trembl
ID A0A067LB14
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17204 PE=4 SV=1
Gene Ontology
ID GO:0004144
description o-acyltransferase wsd1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53505: 26490-27892 , PASA_asmbl_53506: 25961-27167 , PASA_asmbl_53507: 28508-28830
cDNA
(Sanger)
(ID:Location)		 001_D21.ab1: 25961-26872 , 013_E19.ab1: 25961-26842

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006735_040 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_003018_180 0.1215477835 - - PREDICTED: WEB family protein At3g51220-like [Jatropha curcas]
3 Hb_000753_260 0.133579989 transcription factor TF Family: MIKC MADS-box transcription factor 3 [Hevea brasiliensis]
4 Hb_001780_060 0.146149469 - - PREDICTED: uncharacterized protein LOC105631129 [Jatropha curcas]
5 Hb_000376_110 0.1612940842 - - PREDICTED: O-acyltransferase WSD1-like [Brachypodium distachyon]
6 Hb_009662_030 0.1619395858 - - hypothetical protein JCGZ_15748 [Jatropha curcas]
7 Hb_005298_030 0.1622655214 - - hypothetical protein JCGZ_18389 [Jatropha curcas]
8 Hb_000613_200 0.1626752013 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase acetyl-CoA C-acetyltransferase [Hevea brasiliensis]
9 Hb_002890_220 0.1662041791 - - hypothetical protein JCGZ_24899 [Jatropha curcas]
10 Hb_000130_390 0.1675470736 - - PREDICTED: glutamate receptor 2.8-like [Pyrus x bretschneideri]
11 Hb_116701_020 0.1702711813 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000784_130 0.1723051784 - - hypothetical protein JCGZ_22813 [Jatropha curcas]
13 Hb_002374_340 0.1743984306 - - Two-component response regulator ARR9, putative [Ricinus communis]
14 Hb_001454_390 0.1787240225 - - 8-kd dynein light chain, DLC8, pin [Thalassiosira pseudonana CCMP1335]
15 Hb_012662_010 0.1794065554 - - hypothetical protein JCGZ_06358 [Jatropha curcas]
16 Hb_000920_140 0.1811832463 - - annexin [Manihot esculenta]
17 Hb_002875_090 0.182956856 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_007810_040 0.1840041528 - - PREDICTED: dolichyl-phosphate beta-glucosyltransferase [Jatropha curcas]
19 Hb_010578_090 0.1848774584 - - HEV2.1 [Hevea brasiliensis]
20 Hb_002298_040 0.1856664764 - - PREDICTED: uncharacterized protein LOC105633642 [Jatropha curcas]

Gene co-expression network

sample Hb_006735_040 Hb_006735_040 Hb_003018_180 Hb_003018_180 Hb_006735_040--Hb_003018_180 Hb_000753_260 Hb_000753_260 Hb_006735_040--Hb_000753_260 Hb_001780_060 Hb_001780_060 Hb_006735_040--Hb_001780_060 Hb_000376_110 Hb_000376_110 Hb_006735_040--Hb_000376_110 Hb_009662_030 Hb_009662_030 Hb_006735_040--Hb_009662_030 Hb_005298_030 Hb_005298_030 Hb_006735_040--Hb_005298_030 Hb_000130_390 Hb_000130_390 Hb_003018_180--Hb_000130_390 Hb_001140_160 Hb_001140_160 Hb_003018_180--Hb_001140_160 Hb_000957_040 Hb_000957_040 Hb_003018_180--Hb_000957_040 Hb_002298_040 Hb_002298_040 Hb_003018_180--Hb_002298_040 Hb_004545_150 Hb_004545_150 Hb_003018_180--Hb_004545_150 Hb_003018_180--Hb_001780_060 Hb_000784_130 Hb_000784_130 Hb_000753_260--Hb_000784_130 Hb_002890_220 Hb_002890_220 Hb_000753_260--Hb_002890_220 Hb_000753_260--Hb_002298_040 Hb_000753_260--Hb_005298_030 Hb_002374_340 Hb_002374_340 Hb_000753_260--Hb_002374_340 Hb_029879_080 Hb_029879_080 Hb_000753_260--Hb_029879_080 Hb_001454_390 Hb_001454_390 Hb_001780_060--Hb_001454_390 Hb_004738_090 Hb_004738_090 Hb_001780_060--Hb_004738_090 Hb_001780_060--Hb_004545_150 Hb_000500_310 Hb_000500_310 Hb_001780_060--Hb_000500_310 Hb_002875_090 Hb_002875_090 Hb_001780_060--Hb_002875_090 Hb_003906_120 Hb_003906_120 Hb_001780_060--Hb_003906_120 Hb_000920_140 Hb_000920_140 Hb_000376_110--Hb_000920_140 Hb_023988_020 Hb_023988_020 Hb_000376_110--Hb_023988_020 Hb_004032_440 Hb_004032_440 Hb_000376_110--Hb_004032_440 Hb_001696_030 Hb_001696_030 Hb_000376_110--Hb_001696_030 Hb_000641_030 Hb_000641_030 Hb_000376_110--Hb_000641_030 Hb_007810_040 Hb_007810_040 Hb_000376_110--Hb_007810_040 Hb_002232_180 Hb_002232_180 Hb_009662_030--Hb_002232_180 Hb_017134_040 Hb_017134_040 Hb_009662_030--Hb_017134_040 Hb_009662_030--Hb_002890_220 Hb_009662_030--Hb_007810_040 Hb_004813_010 Hb_004813_010 Hb_009662_030--Hb_004813_010 Hb_000264_190 Hb_000264_190 Hb_009662_030--Hb_000264_190 Hb_005298_030--Hb_002890_220 Hb_002221_080 Hb_002221_080 Hb_005298_030--Hb_002221_080 Hb_005298_030--Hb_002374_340 Hb_000809_050 Hb_000809_050 Hb_005298_030--Hb_000809_050 Hb_030982_040 Hb_030982_040 Hb_005298_030--Hb_030982_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
186.638 1.92563 0.53236 15.134 160.241 53.4995
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
187.177 57.1544 59.7999 6.01185 1.67293

CAGE analysis