Hb_002875_090

Information

Type -
Description -
Location Contig2875: 84706-87452
Sequence    

Annotation

kegg
ID rcu:RCOM_0715730
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002523294.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9FFE3
description Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2 SV=1
trembl
ID B9SBC5
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0715730 PE=4 SV=1
Gene Ontology
ID GO:0016668
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30020: 84574-85481
cDNA
(Sanger)
(ID:Location)		 045_N19.ab1: 84574-85406

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002875_090 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_003636_090 0.0755218176 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Jatropha curcas]
3 Hb_000352_150 0.0850866158 - - hypothetical protein JCGZ_11641 [Jatropha curcas]
4 Hb_001780_060 0.1125069938 - - PREDICTED: uncharacterized protein LOC105631129 [Jatropha curcas]
5 Hb_001454_390 0.1141681227 - - 8-kd dynein light chain, DLC8, pin [Thalassiosira pseudonana CCMP1335]
6 Hb_170116_010 0.1167241724 - - Geranyl diphosphate synthase 1 isoform 2 [Theobroma cacao]
7 Hb_003304_080 0.1252995944 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]
8 Hb_003253_010 0.1285364245 - - PREDICTED: uncharacterized protein LOC105111108 [Populus euphratica]
9 Hb_004738_090 0.1286663105 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000038_130 0.1341612773 - - -
11 Hb_007810_040 0.1367323544 - - PREDICTED: dolichyl-phosphate beta-glucosyltransferase [Jatropha curcas]
12 Hb_000590_090 0.1387167865 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
13 Hb_043637_010 0.1390571319 transcription factor TF Family: zf-HD hypothetical protein POPTR_0015s05220g, partial [Populus trichocarpa]
14 Hb_001980_020 0.1427793115 - - -
15 Hb_003788_040 0.1432831634 - - -
16 Hb_009662_030 0.1453984427 - - hypothetical protein JCGZ_15748 [Jatropha curcas]
17 Hb_010098_080 0.1457565208 - - PREDICTED: non-specific phospholipase C4-like [Jatropha curcas]
18 Hb_000270_400 0.1472167798 - - lipase, putative [Ricinus communis]
19 Hb_000500_310 0.1472617274 - - -
20 Hb_000933_140 0.1479365491 - - PREDICTED: uncharacterized protein LOC105630501 [Jatropha curcas]

Gene co-expression network

sample Hb_002875_090 Hb_002875_090 Hb_003636_090 Hb_003636_090 Hb_002875_090--Hb_003636_090 Hb_000352_150 Hb_000352_150 Hb_002875_090--Hb_000352_150 Hb_001780_060 Hb_001780_060 Hb_002875_090--Hb_001780_060 Hb_001454_390 Hb_001454_390 Hb_002875_090--Hb_001454_390 Hb_170116_010 Hb_170116_010 Hb_002875_090--Hb_170116_010 Hb_003304_080 Hb_003304_080 Hb_002875_090--Hb_003304_080 Hb_004738_090 Hb_004738_090 Hb_003636_090--Hb_004738_090 Hb_000085_340 Hb_000085_340 Hb_003636_090--Hb_000085_340 Hb_002067_160 Hb_002067_160 Hb_003636_090--Hb_002067_160 Hb_000997_260 Hb_000997_260 Hb_003636_090--Hb_000997_260 Hb_000270_400 Hb_000270_400 Hb_003636_090--Hb_000270_400 Hb_001980_020 Hb_001980_020 Hb_000352_150--Hb_001980_020 Hb_000352_150--Hb_170116_010 Hb_000352_150--Hb_003636_090 Hb_000352_150--Hb_001454_390 Hb_003253_010 Hb_003253_010 Hb_000352_150--Hb_003253_010 Hb_001780_060--Hb_001454_390 Hb_001780_060--Hb_004738_090 Hb_004545_150 Hb_004545_150 Hb_001780_060--Hb_004545_150 Hb_000500_310 Hb_000500_310 Hb_001780_060--Hb_000500_310 Hb_003906_120 Hb_003906_120 Hb_001780_060--Hb_003906_120 Hb_000590_090 Hb_000590_090 Hb_001454_390--Hb_000590_090 Hb_001454_390--Hb_170116_010 Hb_001454_390--Hb_003253_010 Hb_000038_130 Hb_000038_130 Hb_001454_390--Hb_000038_130 Hb_043637_010 Hb_043637_010 Hb_170116_010--Hb_043637_010 Hb_000523_020 Hb_000523_020 Hb_170116_010--Hb_000523_020 Hb_001635_220 Hb_001635_220 Hb_170116_010--Hb_001635_220 Hb_007810_040 Hb_007810_040 Hb_003304_080--Hb_007810_040 Hb_000050_120 Hb_000050_120 Hb_003304_080--Hb_000050_120 Hb_002078_040 Hb_002078_040 Hb_003304_080--Hb_002078_040 Hb_095397_010 Hb_095397_010 Hb_003304_080--Hb_095397_010 Hb_003304_080--Hb_043637_010 Hb_012654_020 Hb_012654_020 Hb_003304_080--Hb_012654_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1073.87 14.2938 21.3187 19.9995 735.916 550.253
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
556.678 439.362 235.065 24.3983 56.5548

CAGE analysis