Hb_005298_030

Information

Type -
Description -
Location Contig5298: 28731-33850
Sequence    

Annotation

kegg
ID pmum:103333559
description caffeic acid 3-O-methyltransferase
nr
ID KDP30064.1
description hypothetical protein JCGZ_18389 [Jatropha curcas]
swissprot
ID Q43609
description Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1
trembl
ID A0A067KDX9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18389 PE=4 SV=1
Gene Ontology
ID GO:0005634
description caffeic acid 3-o-methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47284: 28791-29015 , PASA_asmbl_47285: 29084-33498 , PASA_asmbl_47286: 33110-33651
cDNA
(Sanger)
(ID:Location)		 012_L19.ab1: 33110-33651

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005298_030 0.0 - - hypothetical protein JCGZ_18389 [Jatropha curcas]
2 Hb_002890_220 0.1260321195 - - hypothetical protein JCGZ_24899 [Jatropha curcas]
3 Hb_000753_260 0.1298067264 transcription factor TF Family: MIKC MADS-box transcription factor 3 [Hevea brasiliensis]
4 Hb_002221_080 0.1380217004 - - PREDICTED: uncharacterized protein LOC105639992 [Jatropha curcas]
5 Hb_002374_340 0.1437922186 - - Two-component response regulator ARR9, putative [Ricinus communis]
6 Hb_000809_050 0.1449052567 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639663 isoform X2 [Jatropha curcas]
7 Hb_030982_040 0.1472978593 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
8 Hb_002298_040 0.1499997948 - - PREDICTED: uncharacterized protein LOC105633642 [Jatropha curcas]
9 Hb_000787_070 0.1521009381 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
10 Hb_010578_090 0.1602246375 - - HEV2.1 [Hevea brasiliensis]
11 Hb_006735_040 0.1622655214 - - unnamed protein product [Vitis vinifera]
12 Hb_000072_280 0.1623833939 - - PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 2-like [Jatropha curcas]
13 Hb_000784_130 0.1676147622 - - hypothetical protein JCGZ_22813 [Jatropha curcas]
14 Hb_000304_020 0.1677287262 - - beta-1,3-glucanase form RRII Gln 3 [Hevea brasiliensis]
15 Hb_029879_080 0.1684194558 - - unknown [Populus trichocarpa]
16 Hb_005016_130 0.1699830369 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
17 Hb_005214_110 0.1711616405 - - -
18 Hb_000175_520 0.1725319953 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_001722_040 0.1746825486 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
20 Hb_002518_250 0.1760115879 - - conserved hypothetical protein 10 [Hevea brasiliensis]

Gene co-expression network

sample Hb_005298_030 Hb_005298_030 Hb_002890_220 Hb_002890_220 Hb_005298_030--Hb_002890_220 Hb_000753_260 Hb_000753_260 Hb_005298_030--Hb_000753_260 Hb_002221_080 Hb_002221_080 Hb_005298_030--Hb_002221_080 Hb_002374_340 Hb_002374_340 Hb_005298_030--Hb_002374_340 Hb_000809_050 Hb_000809_050 Hb_005298_030--Hb_000809_050 Hb_030982_040 Hb_030982_040 Hb_005298_030--Hb_030982_040 Hb_002890_220--Hb_002374_340 Hb_000264_190 Hb_000264_190 Hb_002890_220--Hb_000264_190 Hb_017134_040 Hb_017134_040 Hb_002890_220--Hb_017134_040 Hb_002609_260 Hb_002609_260 Hb_002890_220--Hb_002609_260 Hb_010931_100 Hb_010931_100 Hb_002890_220--Hb_010931_100 Hb_005730_020 Hb_005730_020 Hb_002890_220--Hb_005730_020 Hb_000784_130 Hb_000784_130 Hb_000753_260--Hb_000784_130 Hb_000753_260--Hb_002890_220 Hb_002298_040 Hb_002298_040 Hb_000753_260--Hb_002298_040 Hb_000753_260--Hb_002374_340 Hb_029879_080 Hb_029879_080 Hb_000753_260--Hb_029879_080 Hb_000284_010 Hb_000284_010 Hb_002221_080--Hb_000284_010 Hb_002221_080--Hb_002298_040 Hb_005016_130 Hb_005016_130 Hb_002221_080--Hb_005016_130 Hb_000078_030 Hb_000078_030 Hb_002221_080--Hb_000078_030 Hb_115919_020 Hb_115919_020 Hb_002221_080--Hb_115919_020 Hb_000787_070 Hb_000787_070 Hb_002221_080--Hb_000787_070 Hb_002942_030 Hb_002942_030 Hb_002374_340--Hb_002942_030 Hb_002374_340--Hb_017134_040 Hb_005245_090 Hb_005245_090 Hb_002374_340--Hb_005245_090 Hb_007317_220 Hb_007317_220 Hb_002374_340--Hb_007317_220 Hb_000771_140 Hb_000771_140 Hb_002374_340--Hb_000771_140 Hb_004650_070 Hb_004650_070 Hb_000809_050--Hb_004650_070 Hb_000304_020 Hb_000304_020 Hb_000809_050--Hb_000304_020 Hb_000072_280 Hb_000072_280 Hb_000809_050--Hb_000072_280 Hb_001366_220 Hb_001366_220 Hb_000809_050--Hb_001366_220 Hb_000809_050--Hb_030982_040 Hb_000085_310 Hb_000085_310 Hb_000809_050--Hb_000085_310 Hb_005653_120 Hb_005653_120 Hb_030982_040--Hb_005653_120 Hb_015974_010 Hb_015974_010 Hb_030982_040--Hb_015974_010 Hb_030982_040--Hb_000072_280 Hb_006452_060 Hb_006452_060 Hb_030982_040--Hb_006452_060 Hb_001102_010 Hb_001102_010 Hb_030982_040--Hb_001102_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.603 1.2198 0.22871 1.04886 42.6175 14.2012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.7296 24.0405 20.063 2.08228 0.463277

CAGE analysis