Hb_002374_340

Information

Type -
Description -
Location Contig2374: 302618-305841
Sequence    

Annotation

kegg
ID rcu:RCOM_1030550
description Two-component response regulator ARR9, putative
nr
ID XP_002513745.1
description Two-component response regulator ARR9, putative [Ricinus communis]
swissprot
ID O80365
description Two-component response regulator ARR8 OS=Arabidopsis thaliana GN=ARR8 PE=1 SV=1
trembl
ID B9RJ26
description Two-component response regulator ARR9, putative OS=Ricinus communis GN=RCOM_1030550 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24896: 303682-305968
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_340 0.0 - - Two-component response regulator ARR9, putative [Ricinus communis]
2 Hb_002890_220 0.0680576563 - - hypothetical protein JCGZ_24899 [Jatropha curcas]
3 Hb_002942_030 0.1004597522 - - hypothetical protein EUGRSUZ_K000651 [Eucalyptus grandis]
4 Hb_017134_040 0.1023840088 - - hypothetical protein AALP_AA3G042000 [Arabis alpina]
5 Hb_005245_090 0.103756122 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
6 Hb_007317_220 0.1067853462 - - hypothetical protein JCGZ_12701 [Jatropha curcas]
7 Hb_000771_140 0.1094559785 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
8 Hb_009510_030 0.1129875559 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
9 Hb_002835_190 0.1140153662 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
10 Hb_002506_010 0.1164040115 - - choline transporter-related family protein [Populus trichocarpa]
11 Hb_000175_520 0.1178542111 - - ubiquitin-protein ligase, putative [Ricinus communis]
12 Hb_000264_190 0.118282268 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
13 Hb_002518_250 0.1188845508 - - conserved hypothetical protein 10 [Hevea brasiliensis]
14 Hb_004852_020 0.1224150896 - - -
15 Hb_010931_100 0.1249360197 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
16 Hb_001017_090 0.1263750843 - - -
17 Hb_000753_260 0.1299250403 transcription factor TF Family: MIKC MADS-box transcription factor 3 [Hevea brasiliensis]
18 Hb_005730_020 0.131402345 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]
19 Hb_026048_090 0.1319143855 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003050_040 0.1324342702 desease resistance Gene Name: AAA Katanin p60 ATPase-containing subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_002374_340 Hb_002374_340 Hb_002890_220 Hb_002890_220 Hb_002374_340--Hb_002890_220 Hb_002942_030 Hb_002942_030 Hb_002374_340--Hb_002942_030 Hb_017134_040 Hb_017134_040 Hb_002374_340--Hb_017134_040 Hb_005245_090 Hb_005245_090 Hb_002374_340--Hb_005245_090 Hb_007317_220 Hb_007317_220 Hb_002374_340--Hb_007317_220 Hb_000771_140 Hb_000771_140 Hb_002374_340--Hb_000771_140 Hb_000264_190 Hb_000264_190 Hb_002890_220--Hb_000264_190 Hb_002890_220--Hb_017134_040 Hb_002609_260 Hb_002609_260 Hb_002890_220--Hb_002609_260 Hb_010931_100 Hb_010931_100 Hb_002890_220--Hb_010931_100 Hb_005730_020 Hb_005730_020 Hb_002890_220--Hb_005730_020 Hb_001504_170 Hb_001504_170 Hb_002942_030--Hb_001504_170 Hb_013479_020 Hb_013479_020 Hb_002942_030--Hb_013479_020 Hb_004852_020 Hb_004852_020 Hb_002942_030--Hb_004852_020 Hb_026048_090 Hb_026048_090 Hb_002942_030--Hb_026048_090 Hb_000175_520 Hb_000175_520 Hb_002942_030--Hb_000175_520 Hb_001433_170 Hb_001433_170 Hb_002942_030--Hb_001433_170 Hb_017134_040--Hb_005730_020 Hb_000329_610 Hb_000329_610 Hb_017134_040--Hb_000329_610 Hb_007178_010 Hb_007178_010 Hb_017134_040--Hb_007178_010 Hb_005063_010 Hb_005063_010 Hb_017134_040--Hb_005063_010 Hb_003786_110 Hb_003786_110 Hb_017134_040--Hb_003786_110 Hb_005245_090--Hb_000771_140 Hb_005941_010 Hb_005941_010 Hb_005245_090--Hb_005941_010 Hb_004242_100 Hb_004242_100 Hb_005245_090--Hb_004242_100 Hb_098709_010 Hb_098709_010 Hb_005245_090--Hb_098709_010 Hb_005245_090--Hb_026048_090 Hb_009510_030 Hb_009510_030 Hb_005245_090--Hb_009510_030 Hb_007317_220--Hb_004852_020 Hb_007317_220--Hb_017134_040 Hb_000933_140 Hb_000933_140 Hb_007317_220--Hb_000933_140 Hb_008016_010 Hb_008016_010 Hb_007317_220--Hb_008016_010 Hb_023675_010 Hb_023675_010 Hb_007317_220--Hb_023675_010 Hb_000771_140--Hb_009510_030 Hb_000057_060 Hb_000057_060 Hb_000771_140--Hb_000057_060 Hb_000771_140--Hb_026048_090 Hb_000771_140--Hb_001433_170 Hb_000387_080 Hb_000387_080 Hb_000771_140--Hb_000387_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
136.66 6.2781 2.47613 14.2736 201.728 158.181
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
206.439 82.4548 99.0174 18.0628 2.73779

CAGE analysis