Hb_000072_280

Information

Type -
Description -
Location Contig72: 403735-417555
Sequence    

Annotation

kegg
ID rcu:RCOM_0877560
description hypothetical protein
nr
ID XP_012078493.1
description PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 2-like [Jatropha curcas]
swissprot
ID F4K657
description Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Arabidopsis thaliana GN=BLOS2 PE=1 SV=1
trembl
ID A0A067KLF2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13179 PE=4 SV=1
Gene Ontology
ID GO:0031083
description biogenesis of lysosome-related organelles complex 1 subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55608: 406902-407874 , PASA_asmbl_55609: 406933-407808 , PASA_asmbl_55610: 408538-409476
cDNA
(Sanger)
(ID:Location)		 025_M23.ab1: 408538-409360 , 036_G09.ab1: 408538-409298

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000072_280 0.0 - - PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 2-like [Jatropha curcas]
2 Hb_008695_190 0.0727014757 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
3 Hb_001191_100 0.0935686309 - - F-actin capping protein beta subunit [Populus trichocarpa]
4 Hb_004882_020 0.095080328 - - -
5 Hb_001366_220 0.09605277 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000085_310 0.0975512162 - - hypothetical protein JCGZ_00974 [Jatropha curcas]
7 Hb_001366_230 0.0979316856 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005357_150 0.101085236 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_001981_090 0.1011626015 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
10 Hb_000809_040 0.1025056512 - - Serine/threonine-protein kinase SAPK10, putative [Ricinus communis]
11 Hb_025087_010 0.1051554856 - - PREDICTED: RING-H2 finger protein ATL56 [Jatropha curcas]
12 Hb_006824_020 0.1072497787 - - PREDICTED: thioredoxin domain-containing protein 9 homolog [Jatropha curcas]
13 Hb_000771_140 0.10868193 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
14 Hb_000809_050 0.1125239448 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639663 isoform X2 [Jatropha curcas]
15 Hb_000387_080 0.1151948909 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
16 Hb_000313_380 0.1172861403 - - conserved hypothetical protein [Ricinus communis]
17 Hb_026988_020 0.1180260496 - - outward rectifying K+ channel [Hevea brasiliensis]
18 Hb_001722_040 0.1192411676 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
19 Hb_000861_040 0.1203530485 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
20 Hb_065500_050 0.121847966 - - lipoate-protein ligase B, putative [Ricinus communis]

Gene co-expression network

sample Hb_000072_280 Hb_000072_280 Hb_008695_190 Hb_008695_190 Hb_000072_280--Hb_008695_190 Hb_001191_100 Hb_001191_100 Hb_000072_280--Hb_001191_100 Hb_004882_020 Hb_004882_020 Hb_000072_280--Hb_004882_020 Hb_001366_220 Hb_001366_220 Hb_000072_280--Hb_001366_220 Hb_000085_310 Hb_000085_310 Hb_000072_280--Hb_000085_310 Hb_001366_230 Hb_001366_230 Hb_000072_280--Hb_001366_230 Hb_025087_010 Hb_025087_010 Hb_008695_190--Hb_025087_010 Hb_001981_090 Hb_001981_090 Hb_008695_190--Hb_001981_090 Hb_008695_190--Hb_001366_230 Hb_000809_040 Hb_000809_040 Hb_008695_190--Hb_000809_040 Hb_008695_190--Hb_004882_020 Hb_001191_100--Hb_001366_230 Hb_000173_170 Hb_000173_170 Hb_001191_100--Hb_000173_170 Hb_000252_040 Hb_000252_040 Hb_001191_100--Hb_000252_040 Hb_065500_050 Hb_065500_050 Hb_001191_100--Hb_065500_050 Hb_000427_110 Hb_000427_110 Hb_001191_100--Hb_000427_110 Hb_001191_100--Hb_001366_220 Hb_004882_020--Hb_000809_040 Hb_001437_240 Hb_001437_240 Hb_004882_020--Hb_001437_240 Hb_004882_020--Hb_001981_090 Hb_004882_020--Hb_001366_220 Hb_001366_220--Hb_000809_040 Hb_000313_380 Hb_000313_380 Hb_001366_220--Hb_000313_380 Hb_000387_080 Hb_000387_080 Hb_001366_220--Hb_000387_080 Hb_001366_220--Hb_000085_310 Hb_001366_220--Hb_001981_090 Hb_002357_040 Hb_002357_040 Hb_001366_220--Hb_002357_040 Hb_004108_050 Hb_004108_050 Hb_000085_310--Hb_004108_050 Hb_000085_310--Hb_000809_040 Hb_000085_310--Hb_001366_230 Hb_002662_100 Hb_002662_100 Hb_000085_310--Hb_002662_100 Hb_005357_150 Hb_005357_150 Hb_000085_310--Hb_005357_150 Hb_001366_230--Hb_025087_010 Hb_183963_020 Hb_183963_020 Hb_001366_230--Hb_183963_020 Hb_001366_230--Hb_000313_380 Hb_001804_040 Hb_001804_040 Hb_001366_230--Hb_001804_040 Hb_026988_020 Hb_026988_020 Hb_001366_230--Hb_026988_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
61.8614 6.41111 5.76275 3.58523 62.116 35.7127
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
78.7635 50.8019 69.5336 11.0061 3.02355

CAGE analysis